Difference between revisions of "RME297"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9985 RXN-9985] == * direction: ** LEFT-TO-RIGHT * common name: ** sphingomyelinase * ec number:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9985 RXN-9985] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** sphingomyelinase
+
** ORF
 +
** prolyl-trna_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.26 EC-3.2.1.26]
+
** [http://enzyme.expasy.org/EC/6.1.1.15 EC-6.1.1.15]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-D-Fructofuranosides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glycosides]][c] '''+''' 1 [[BETA-D-FRUCTOSE]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[PRO-tRNAs]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a β-D-fructofuranoside[c] '''+''' 1 H2O[c] '''=>''' 1 a glycoside[c] '''+''' 1 β-D-fructofuranose[c]
+
** 1 ATP[c] '''+''' 1 a tRNApro[c] '''+''' 1 L-proline[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-prolyl-[tRNApro][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12644]]
+
* [[Tiso_gene_11974]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14791]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14305 14305]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O51363 O51363]
 +
** [http://www.uniprot.org/uniprot/O58734 O58734]
 +
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 +
** [http://www.uniprot.org/uniprot/P43830 P43830]
 +
** [http://www.uniprot.org/uniprot/P47525 P47525]
 +
** [http://www.uniprot.org/uniprot/O26708 O26708]
 +
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 +
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 +
** [http://www.uniprot.org/uniprot/P56124 P56124]
 +
** [http://www.uniprot.org/uniprot/O83195 O83195]
 +
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 +
** [http://www.uniprot.org/uniprot/O31755 O31755]
 +
** [http://www.uniprot.org/uniprot/P36431 P36431]
 +
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 +
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 +
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 +
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 +
** [http://www.uniprot.org/uniprot/P75382 P75382]
 +
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 +
** [http://www.uniprot.org/uniprot/P07814 P07814]
 +
** [http://www.uniprot.org/uniprot/P16659 P16659]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=sphingomyelinase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-3.2.1.26}}
+
{{#set: common name=prolyl-trna_synthetase}}
−
{{#set: gene associated=Tiso_gene_12644}}
+
{{#set: ec number=EC-6.1.1.15}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_11974|Tiso_gene_14791}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:35, 18 March 2018

Reaction PROLINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • prolyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNApro[c] + 1 L-proline[c] => 1 diphosphate[c] + 1 AMP[c] + 1 an L-prolyl-[tRNApro][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RME297&oldid=25508"