Difference between revisions of "Ubiquinones"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17312 CPD-17312] == * smiles: ** CCC=CCC=CCC=CCC=CCC=CCC=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GSHTRAN-RXN GSHTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutathione_s-transfera...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17312 CPD-17312] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GSHTRAN-RXN GSHTRAN-RXN] ==
−
* smiles:
+
* direction:
−
** CCC=CCC=CCC=CCC=CCC=CCC=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=MENFZXMQSYYVRK-CRCGJGBYSA-J
+
 
* common name:
 
* common name:
−
** docosahexaenoyl-CoA
+
** glutathione_s-transferase
−
* molecular weight:
+
** glutathione_s-
−
** 1073.981   
+
** ORF
 +
** phi_class_glutathione_s-transferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.18 EC-2.5.1.18]
 
* Synonym(s):
 
* Synonym(s):
−
** all-cis-docosa-4,7,10,13,16,19-hexaenoyl-CoA
 
−
** (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
 
−
** (4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-16137]]
+
** 1 [[GLUTATHIONE]][c] '''+''' 1 [[RX]][c] '''=>''' 1 [[S-Substituted-Glutathione]][c] '''+''' 1 [[HX]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
−
* [[RXN-16063]]
+
** 1 glutathione[c] '''+''' 1 RX[c] '''=>''' 1 a glutathione-toxin conjugate[c] '''+''' 1 HX[c]
−
* [[RXN-16103]]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_19791]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_20110]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6036]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3535]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1104]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_8508]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_19041]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1666]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_8389]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3233]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8509]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_5129]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_2775]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[athaliana]]
 +
== Pathways  ==
 +
* [[PWY-6842]], glutathione-mediated detoxification II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6842 PWY-6842]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-4061]], glutathione-mediated detoxification I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4061 PWY-4061]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=71581248 71581248]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03522 R03522]
−
* CHEBI:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=74298 74298]
+
** [http://www.uniprot.org/uniprot/P30116 P30116]
−
{{#set: smiles=CCC=CCC=CCC=CCC=CCC=CCC=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
+
** [http://www.uniprot.org/uniprot/P04903 P04903]
−
{{#set: inchi key=InChIKey=MENFZXMQSYYVRK-CRCGJGBYSA-J}}
+
** [http://www.uniprot.org/uniprot/P04904 P04904]
−
{{#set: common name=docosahexaenoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/P13745 P13745]
−
{{#set: molecular weight=1073.981    }}
+
** [http://www.uniprot.org/uniprot/P08011 P08011]
−
{{#set: common name=all-cis-docosa-4,7,10,13,16,19-hexaenoyl-CoA|(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA|(4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/Q7M0B7 Q7M0B7]
−
{{#set: produced by=RXN-16137}}
+
** [http://www.uniprot.org/uniprot/P08009 P08009]
−
{{#set: consumed or produced by=RXN-16063|RXN-16103}}
+
** [http://www.uniprot.org/uniprot/P04905 P04905]
 +
** [http://www.uniprot.org/uniprot/P21266 P21266]
 +
** [http://www.uniprot.org/uniprot/P09211 P09211]
 +
** [http://www.uniprot.org/uniprot/P28161 P28161]
 +
** [http://www.uniprot.org/uniprot/Q08863 Q08863]
 +
** [http://www.uniprot.org/uniprot/P30109 P30109]
 +
** [http://www.uniprot.org/uniprot/P28338 P28338]
 +
** [http://www.uniprot.org/uniprot/P46088 P46088]
 +
** [http://www.uniprot.org/uniprot/P15964 P15964]
 +
** [http://www.uniprot.org/uniprot/P46439 P46439]
 +
** [http://www.uniprot.org/uniprot/Q9VG97 Q9VG97]
 +
** [http://www.uniprot.org/uniprot/Q03013 Q03013]
 +
** [http://www.uniprot.org/uniprot/P41043 P41043]
 +
** [http://www.uniprot.org/uniprot/P28801 P28801]
 +
** [http://www.uniprot.org/uniprot/P46418 P46418]
 +
** [http://www.uniprot.org/uniprot/P46425 P46425]
 +
** [http://www.uniprot.org/uniprot/P0A9D2 P0A9D2]
 +
** [http://www.uniprot.org/uniprot/P08263 P08263]
 +
** [http://www.uniprot.org/uniprot/P30712 P30712]
 +
** [http://www.uniprot.org/uniprot/Q9NAW7 Q9NAW7]
 +
** [http://www.uniprot.org/uniprot/P08515 P08515]
 +
** [http://www.uniprot.org/uniprot/P10620 P10620]
 +
** [http://www.uniprot.org/uniprot/P19639 P19639]
 +
** [http://www.uniprot.org/uniprot/Q9WU21 Q9WU21]
 +
** [http://www.uniprot.org/uniprot/P15626 P15626]
 +
** [http://www.uniprot.org/uniprot/Q08862 Q08862]
 +
** [http://www.uniprot.org/uniprot/P26624 P26624]
 +
** [http://www.uniprot.org/uniprot/Q03377 Q03377]
 +
** [http://www.uniprot.org/uniprot/P19157 P19157]
 +
** [http://www.uniprot.org/uniprot/P20137 P20137]
 +
** [http://www.uniprot.org/uniprot/Q9VG95 Q9VG95]
 +
** [http://www.uniprot.org/uniprot/Q9VG98 Q9VG98]
 +
** [http://www.uniprot.org/uniprot/Q9VG96 Q9VG96]
 +
** [http://www.uniprot.org/uniprot/O31817 O31817]
 +
** [http://www.uniprot.org/uniprot/Q8X6U4 Q8X6U4]
 +
** [http://www.uniprot.org/uniprot/P30713 P30713]
 +
** [http://www.uniprot.org/uniprot/Q42706 Q42706]
 +
** [http://www.uniprot.org/uniprot/Q28514 Q28514]
 +
** [http://www.uniprot.org/uniprot/Q9TXB7 Q9TXB7]
 +
** [http://www.uniprot.org/uniprot/P09792 P09792]
 +
** [http://www.uniprot.org/uniprot/P16413 P16413]
 +
** [http://www.uniprot.org/uniprot/P81706 P81706]
 +
** [http://www.uniprot.org/uniprot/P09488 P09488]
 +
** [http://www.uniprot.org/uniprot/Q7M446 Q7M446]
 +
** [http://www.uniprot.org/uniprot/P10299 P10299]
 +
** [http://www.uniprot.org/uniprot/Q7M0B6 Q7M0B6]
 +
** [http://www.uniprot.org/uniprot/Q7M0C0 Q7M0C0]
 +
** [http://www.uniprot.org/uniprot/Q7M0F7 Q7M0F7]
 +
** [http://www.uniprot.org/uniprot/P22416 P22416]
 +
** [http://www.uniprot.org/uniprot/P30102 P30102]
 +
** [http://www.uniprot.org/uniprot/P28342 P28342]
 +
** [http://www.uniprot.org/uniprot/P24473 P24473]
 +
** [http://www.uniprot.org/uniprot/Q7M0F4 Q7M0F4]
 +
** [http://www.uniprot.org/uniprot/Q7M0F3 Q7M0F3]
 +
** [http://www.uniprot.org/uniprot/P26697 P26697]
 +
** [http://www.uniprot.org/uniprot/Q9PS57 Q9PS57]
 +
** [http://www.uniprot.org/uniprot/Q9JLQ6 Q9JLQ6]
 +
** [http://www.uniprot.org/uniprot/P30115 P30115]
 +
** [http://www.uniprot.org/uniprot/P09210 P09210]
 +
** [http://www.uniprot.org/uniprot/Q01579 Q01579]
 +
** [http://www.uniprot.org/uniprot/P24472 P24472]
 +
** [http://www.uniprot.org/uniprot/Q7M0F5 Q7M0F5]
 +
** [http://www.uniprot.org/uniprot/Q7M0F6 Q7M0F6]
 +
** [http://www.uniprot.org/uniprot/Q7M0F2 Q7M0F2]
 +
** [http://www.uniprot.org/uniprot/Q9TQQ8 Q9TQQ8]
 +
** [http://www.uniprot.org/uniprot/Q7M0B8 Q7M0B8]
 +
** [http://www.uniprot.org/uniprot/Q7M059 Q7M059]
 +
** [http://www.uniprot.org/uniprot/P30568 P30568]
 +
** [http://www.uniprot.org/uniprot/Q03425 Q03425]
 +
** [http://www.uniprot.org/uniprot/P10649 P10649]
 +
** [http://www.uniprot.org/uniprot/P46422 P46422]
 +
** [http://www.uniprot.org/uniprot/P45875 P45875]
 +
** [http://www.uniprot.org/uniprot/P42769 P42769]
 +
** [http://www.uniprot.org/uniprot/P46436 P46436]
 +
** [http://www.uniprot.org/uniprot/Q7M0F1 Q7M0F1]
 +
** [http://www.uniprot.org/uniprot/P42760 P42760]
 +
** [http://www.uniprot.org/uniprot/P42761 P42761]
 +
** [http://www.uniprot.org/uniprot/Q9GQE3 Q9GQE3]
 +
** [http://www.uniprot.org/uniprot/P46427 P46427]
 +
** [http://www.uniprot.org/uniprot/P48438 P48438]
 +
** [http://www.uniprot.org/uniprot/Q08392 Q08392]
 +
** [http://www.uniprot.org/uniprot/Q08393 Q08393]
 +
** [http://www.uniprot.org/uniprot/P30711 P30711]
 +
** [http://www.uniprot.org/uniprot/Q9UDH6 Q9UDH6]
 +
** [http://www.uniprot.org/uniprot/Q9UDH3 Q9UDH3]
 +
** [http://www.uniprot.org/uniprot/Q9UDH2 Q9UDH2]
 +
** [http://www.uniprot.org/uniprot/Q9UDH1 Q9UDH1]
 +
** [http://www.uniprot.org/uniprot/P46432 P46432]
 +
** [http://www.uniprot.org/uniprot/P46433 P46433]
 +
** [http://www.uniprot.org/uniprot/P46420 P46420]
 +
** [http://www.uniprot.org/uniprot/P27013 P27013]
 +
** [http://www.uniprot.org/uniprot/P27014 P27014]
 +
** [http://www.uniprot.org/uniprot/P20135 P20135]
 +
** [http://www.uniprot.org/uniprot/P46409 P46409]
 +
** [http://www.uniprot.org/uniprot/P46421 P46421]
 +
** [http://www.uniprot.org/uniprot/P46431 P46431]
 +
** [http://www.uniprot.org/uniprot/Q7M0B9 Q7M0B9]
 +
** [http://www.uniprot.org/uniprot/Q7M3E7 Q7M3E7]
 +
** [http://www.uniprot.org/uniprot/Q7M3E8 Q7M3E8]
 +
** [http://www.uniprot.org/uniprot/Q7M3E9 Q7M3E9]
 +
** [http://www.uniprot.org/uniprot/Q64471 Q64471]
 +
** [http://www.uniprot.org/uniprot/Q91VB0 Q91VB0]
 +
** [http://www.uniprot.org/uniprot/P15214 P15214]
 +
** [http://www.uniprot.org/uniprot/P47954 P47954]
 +
** [http://www.uniprot.org/uniprot/Q60550 Q60550]
 +
** [http://www.uniprot.org/uniprot/Q12760 Q12760]
 +
** [http://www.uniprot.org/uniprot/O65032 O65032]
 +
** [http://www.uniprot.org/uniprot/O65857 O65857]
 +
** [http://www.uniprot.org/uniprot/O82451 O82451]
 +
** [http://www.uniprot.org/uniprot/O24595 O24595]
 +
** [http://www.uniprot.org/uniprot/O49235 O49235]
 +
** [http://www.uniprot.org/uniprot/O04437 O04437]
 +
** [http://www.uniprot.org/uniprot/P30110 P30110]
 +
** [http://www.uniprot.org/uniprot/P30111 P30111]
 +
** [http://www.uniprot.org/uniprot/O04874 O04874]
 +
** [http://www.uniprot.org/uniprot/P32111 P32111]
 +
** [http://www.uniprot.org/uniprot/O22330 O22330]
 +
** [http://www.uniprot.org/uniprot/O49821 O49821]
 +
** [http://www.uniprot.org/uniprot/O65344 O65344]
 +
** [http://www.uniprot.org/uniprot/O81602 O81602]
 +
** [http://www.uniprot.org/uniprot/O85984 O85984]
 +
** [http://www.uniprot.org/uniprot/Q21355 Q21355]
 +
** [http://www.uniprot.org/uniprot/O16115 O16115]
 +
** [http://www.uniprot.org/uniprot/O16116 O16116]
 +
** [http://www.uniprot.org/uniprot/Q9ZRT5 Q9ZRT5]
 +
** [http://www.uniprot.org/uniprot/Q9ZRW8 Q9ZRW8]
 +
** [http://www.uniprot.org/uniprot/Q9SM20 Q9SM20]
 +
** [http://www.uniprot.org/uniprot/Q9ZP62 Q9ZP62]
 +
** [http://www.uniprot.org/uniprot/Q9ZS18 Q9ZS18]
 +
** [http://www.uniprot.org/uniprot/Q9ZS16 Q9ZS16]
 +
** [http://www.uniprot.org/uniprot/Q9SB97 Q9SB97]
 +
** [http://www.uniprot.org/uniprot/Q9ZS17 Q9ZS17]
 +
** [http://www.uniprot.org/uniprot/Q9ZRR6 Q9ZRR6]
 +
** [http://www.uniprot.org/uniprot/P20432 P20432]
 +
** [http://www.uniprot.org/uniprot/P14942 P14942]
 +
** [http://www.uniprot.org/uniprot/P08010 P08010]
 +
** [http://www.uniprot.org/uniprot/P04906 P04906]
 +
** [http://www.uniprot.org/uniprot/P12653 P12653]
 +
** [http://www.uniprot.org/uniprot/P04907 P04907]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=glutathione_s-transferase}}
 +
{{#set: common name=glutathione_s-}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=phi_class_glutathione_s-transferase}}
 +
{{#set: ec number=EC-2.5.1.18}}
 +
{{#set: gene associated=Tiso_gene_19791|Tiso_gene_20110|Tiso_gene_6036|Tiso_gene_3535|Tiso_gene_1104|Tiso_gene_8508|Tiso_gene_19041|Tiso_gene_1666|Tiso_gene_8389|Tiso_gene_3233|Tiso_gene_8509|Tiso_gene_5129|Tiso_gene_2775}}
 +
{{#set: in pathway=PWY-6842|PWY-4061}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:42, 18 March 2018

Reaction GSHTRAN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glutathione_s-transferase
    • glutathione_s-
    • ORF
    • phi_class_glutathione_s-transferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6842, glutathione-mediated detoxification II: PWY-6842
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-4061, glutathione-mediated detoxification I: PWY-4061
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Ubiquinones&oldid=26235"