Difference between revisions of "SPHINGOLIPID-SYN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPAIF FPAIF] == * direction: ** REVERSIBLE * common name: ** phosphoribosylaminoimidazolecarboxamid...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2542 RXN-2542] == * direction: ** LEFT-TO-RIGHT * common name: ** mpbq_msbq_methyltransferase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPAIF FPAIF] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2542 RXN-2542] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphoribosylaminoimidazolecarboxamide formyltransferase
+
** mpbq_msbq_methyltransferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.1.295 EC-2.1.1.295]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[AICAR]][c] '''+''' 1.0 [[10-FORMYL-THF]][c] '''<=>''' 1.0 [[THF]][c] '''+''' 1.0 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c]
+
** 1 [[MPBQ]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DMPBQ]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] '''+''' 1.0 10-formyl-tetrahydrofolate mono-L-glutamate[c] '''<=>''' 1.0 tetrahydropteroyl mono-L-glutamate[c] '''+''' 1.0 5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide[c]
+
** 1 2-methyl-6-phytyl-1,4-benzoquinol[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 2,3-dimethyl-6-phytyl-1,4-benzoquinol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18420]]
+
* Gene: [[Tiso_gene_11392]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2596]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* LIGAND-RXN:
−
{{#set: common name=phosphoribosylaminoimidazolecarboxamide formyltransferase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07501 R07501]
−
{{#set: gene associated=Tiso_gene_18420}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=mpbq_msbq_methyltransferase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-2.1.1.295}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: gene associated=Tiso_gene_11392|Tiso_gene_2596}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-1422}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:48, 21 March 2018

Reaction RXN-2542

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • mpbq_msbq_methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-methyl-6-phytyl-1,4-benzoquinol[c] + 1 S-adenosyl-L-methionine[c] => 1 H+[c] + 1 S-adenosyl-L-homocysteine[c] + 1 2,3-dimethyl-6-phytyl-1,4-benzoquinol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1422, vitamin E biosynthesis (tocopherols): PWY-1422
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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