Difference between revisions of "Proteins-with-incorrect-disulfides"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPAIF FPAIF] == * direction: ** REVERSIBLE * common name: ** phosphoribosylaminoimidazolecarboxamid...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPAIF FPAIF] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
+
** phosphoribosylaminoimidazolecarboxamide formyltransferase
−
** ORF
+
−
** atp-dependent_rna_helicase_dhx30-like
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.1.1.21 EC-6.1.1.21]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HIS]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HIS-tRNAs]][c] '''=>''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** 1.0 [[AICAR]][c] '''+''' 1.0 [[10-FORMYL-THF]][c] '''<=>''' 1.0 [[THF]][c] '''+''' 1.0 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-histidine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAhis[c] '''=>''' 1 an L-histidyl-[tRNAhis][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
** 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] '''+''' 1.0 10-formyl-tetrahydrofolate mono-L-glutamate[c] '''<=>''' 1.0 tetrahydropteroyl mono-L-glutamate[c] '''+''' 1.0 5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12634]]
+
* Gene: [[Tiso_gene_18420]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13414]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8798]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17313 17313]
+
{{#set: common name=phosphoribosylaminoimidazolecarboxamide formyltransferase}}
−
* LIGAND-RXN:
+
{{#set: gene associated=Tiso_gene_18420}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
+
{{#set: in pathway=}}
−
* UNIPROT:
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
+
{{#set: reconstruction source=orthology-creinhardtii}}
−
** [http://www.uniprot.org/uniprot/O58028 O58028]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/O67223 O67223]
+
−
** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
+
−
** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
+
−
** [http://www.uniprot.org/uniprot/P56455 P56455]
+
−
** [http://www.uniprot.org/uniprot/Q58406 Q58406]
+
−
** [http://www.uniprot.org/uniprot/O32039 O32039]
+
−
** [http://www.uniprot.org/uniprot/O51160 O51160]
+
−
** [http://www.uniprot.org/uniprot/O66522 O66522]
+
−
** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
+
−
** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
+
−
** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
+
−
** [http://www.uniprot.org/uniprot/P47281 P47281]
+
−
** [http://www.uniprot.org/uniprot/O34459 O34459]
+
−
** [http://www.uniprot.org/uniprot/O83647 O83647]
+
−
** [http://www.uniprot.org/uniprot/O84547 O84547]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
+
−
** [http://www.uniprot.org/uniprot/P43823 P43823]
+
−
** [http://www.uniprot.org/uniprot/Q61035 Q61035]
+
−
** [http://www.uniprot.org/uniprot/P30053 P30053]
+
−
** [http://www.uniprot.org/uniprot/P46696 P46696]
+
−
** [http://www.uniprot.org/uniprot/P51348 P51348]
+
−
** [http://www.uniprot.org/uniprot/P75069 P75069]
+
−
** [http://www.uniprot.org/uniprot/Q55653 Q55653]
+
−
** [http://www.uniprot.org/uniprot/Q49027 Q49027]
+
−
** [http://www.uniprot.org/uniprot/P07263 P07263]
+
−
** [http://www.uniprot.org/uniprot/P60906 P60906]
+
−
** [http://www.uniprot.org/uniprot/P12081 P12081]
+
−
** [http://www.uniprot.org/uniprot/P93422 P93422]
+
−
** [http://www.uniprot.org/uniprot/O82413 O82413]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
+
−
{{#set: ec number=EC-6.1.1.21}}
+
−
{{#set: gene associated=Tiso_gene_12634|Tiso_gene_13414|Tiso_gene_8798}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 14:48, 21 March 2018

Reaction FPAIF

  • direction:
    • REVERSIBLE
  • common name:
    • phosphoribosylaminoimidazolecarboxamide formyltransferase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] + 1.0 10-formyl-tetrahydrofolate mono-L-glutamate[c] <=> 1.0 tetrahydropteroyl mono-L-glutamate[c] + 1.0 5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Proteins-with-incorrect-disulfides&oldid=30317"