Difference between revisions of "TRYPTAMINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANIDINOBUTANAMIDE-NH3-RXN GUANIDINOBUTANAMIDE-NH3-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Gene == Gene Tiso_gene_2527 == * right end position: ** 7885 * transcription direction: ** POSITIVE * left end position: ** 6449 * centisome position: ** 33.84946...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANIDINOBUTANAMIDE-NH3-RXN GUANIDINOBUTANAMIDE-NH3-RXN] ==
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== Gene Tiso_gene_2527 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7885
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* common name:
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* transcription direction:
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** amidase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
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** 6449
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* centisome position:
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** 33.849464   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[4-GUANIDO-BUTYRAMIDE]][c] '''=>''' 1 [[CPD-592]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H2O[c] '''+''' 1 4-guanidinobutyramide[c] '''=>''' 1 4-guanidinobutanoate[c] '''+''' 1 ammonium[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-10949]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_13682]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-10952]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: automated-name-match
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* [[Tiso_gene_7596]]
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* Reaction: [[RXN-10953]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[ARGDEG-V-PWY]], L-arginine degradation X (arginine monooxygenase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-V-PWY ARGDEG-V-PWY]
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* Reaction: [[RXN-10954]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* Category: [[orthology]]
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* Reaction: [[RXN-7253]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: automated-name-match
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-5408]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-4702]]
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* [[PWY-2301]]
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* [[PWY-6363]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7885}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34375 34375]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6449}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03180 R03180]
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{{#set: centisome position=33.849464    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN|RXN-10949|RXN-10952|RXN-10953|RXN-10954|RXN-7253|RXN0-5408}}
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{{#set: common name=amidase}}
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{{#set: pathway associated=PWY-4702|PWY-2301|PWY-6363}}
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{{#set: ec number=EC-3.5.1.4}}
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{{#set: gene associated=Tiso_gene_13682|Tiso_gene_7596}}
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{{#set: in pathway=ARGDEG-V-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:48, 21 March 2018

Gene Tiso_gene_2527

  • right end position:
    • 7885
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6449
  • centisome position:
    • 33.849464
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRYPTAMINE&oldid=30356"