Difference between revisions of "Cis-cis-D7-19-C38-2-ACPs"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDYLPROLYL-ISOMERASE-RXN PEPTIDYLPROLYL-ISOMERASE-RXN] == * direction: ** REVERSIBLE * common n...")
Line 1: Line 1:
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[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDYLPROLYL-ISOMERASE-RXN PEPTIDYLPROLYL-ISOMERASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** all-trans-farnesol biosynthesis
+
** at2g38730
 +
** ORF
 +
** peptidyl-prolyl_cis-trans_isomerase
 +
** peptidyl-prolyl_cis-trans_isomerase-like_2
 +
** peptidyl-prolyl_cis-trans_isomerase_cyclophilin_type
 +
** peptidyl-prolyl_cis-trans_isomerase_b
 +
** peptidyl-prolyl_cis-transisomerase
 +
** peptidyl-prolyl_cis-trans_isomerase_d-_partial
 +
** peptidylprolyl_isomerase
 +
** cyclophilin
 +
** wd40_repeat-containing_protein
 +
** mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase
 +
** heat_shock_protein_70
 +
** cyclophlin_abh
 +
** outer_envelope_protein_chloroplastic
 +
** amp-dependent_synthetase_and_ligase
 +
** peptidylprolyl_cistransisomeraseppi1
 +
** peptidyl-prolyl_isomerase
 +
** peptidyl-prolyl_cis-transisomerasec
 +
** nuclear_elongation_and_deformation_protein_1
 +
** nuclear_cap-binding_protein
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.2.1.8 EC-5.2.1.8]
 
* Synonym(s):
 
* Synonym(s):
−
** trans,trans-farnesol biosynthesis
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''3''' reactions found over '''4''' reactions in the full pathway
+
* With identifiers:
−
* [[FPPSYN-RXN]]
+
** 1 [[CPD-8624]][c] '''<=>''' 1 [[CPD-8625]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_16284]]
+
** 1 a [protein]-L-proline (&omega; = 180)[c] '''<=>''' 1 a [protein]-L-proline (&omega; = 0)[c]
−
** 4 reconstruction source(s) associated:
+
 
−
*** [[orthology-athaliana]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-synechocystis]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_6211]]
−
*** [[manual-primary_network]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[GPPSYN-RXN]]
+
*** Assignment: EC-NUMBER
−
** 9 associated gene(s):
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_19542]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_18201]]
+
* Gene: [[Tiso_gene_13541]]
−
*** [[Tiso_gene_16284]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_2848]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_1035]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_4719]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_11582]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_13582]]
+
* Gene: [[Tiso_gene_3939]]
−
*** [[Tiso_gene_10317]]
+
** Source: [[orthology-esiliculosus]]
−
** 5 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_19510]]
−
*** [[orthology-athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-creinhardtii]]
+
*** Assignment: EC-NUMBER
−
*** [[orthology-synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[orthology-esiliculosus]]
+
*** Assignment: EC-NUMBER
−
*** [[manual-primary_network]]
+
* Gene: [[Tiso_gene_14322]]
−
* [[IPPISOM-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
** 1 associated gene(s):
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Tiso_gene_8653]]
+
** Source: [[orthology-esiliculosus]]
−
** 2 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_4273]]
−
*** [[manual-primary_network]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
+
*** Assignment: EC-NUMBER
−
== Reaction(s) not found ==
+
** Source: [[annotation-experimental_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8617 RXN-8617]
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19431]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_303]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_565]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11831]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2245]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3172]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14583]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17484]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2166]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11161]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_13636]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15556]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_7718]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18879]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17027]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19799]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8216]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10560]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5934]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_7717]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_19642]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20539]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11832]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20316]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14085]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9975]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19432]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5022]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17230]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17722]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12758]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5063]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18421]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8055]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10268]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9591]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18505]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4076]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11932]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_11070]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9976]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17352]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5023]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13794]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15858]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9733]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8283]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19952]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_66]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8435]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5207]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18908]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10084]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19998]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8433]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4395]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14514]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7896]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7386]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15481]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6629]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8543]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_8905]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10233]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15137]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14567]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1404]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_13872]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7851]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14086]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18813]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3171]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3721]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11786]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_856]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9531]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8110]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8432]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18320]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2192]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8434]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15138]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15555]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19919]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17206]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10399]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18321]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9105]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9648]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_8436]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18283]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3109]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_857]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2759}}
+
* LIGAND-RXN:
−
{{#set: common name=all-trans-farnesol biosynthesis}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04273 R04273]
−
{{#set: common name=trans,trans-farnesol biosynthesis}}
+
* UNIPROT:
−
{{#set: reaction found=3}}
+
** [http://www.uniprot.org/uniprot/P20081 P20081]
−
{{#set: total reaction=4}}
+
** [http://www.uniprot.org/uniprot/P62942 P62942]
−
{{#set: completion rate=75.0}}
+
** [http://www.uniprot.org/uniprot/P30412 P30412]
 +
** [http://www.uniprot.org/uniprot/P24367 P24367]
 +
** [http://www.uniprot.org/uniprot/P30405 P30405]
 +
** [http://www.uniprot.org/uniprot/P28725 P28725]
 +
** [http://www.uniprot.org/uniprot/P14088 P14088]
 +
** [http://www.uniprot.org/uniprot/Q08752 Q08752]
 +
** [http://www.uniprot.org/uniprot/Q26994 Q26994]
 +
** [http://www.uniprot.org/uniprot/P45877 P45877]
 +
** [http://www.uniprot.org/uniprot/Q9DCY1 Q9DCY1]
 +
** [http://www.uniprot.org/uniprot/P18203 P18203]
 +
** [http://www.uniprot.org/uniprot/O25982 O25982]
 +
** [http://www.uniprot.org/uniprot/O66105 O66105]
 +
** [http://www.uniprot.org/uniprot/Q9ZL49 Q9ZL49]
 +
** [http://www.uniprot.org/uniprot/P25007 P25007]
 +
** [http://www.uniprot.org/uniprot/Q9UDK1 Q9UDK1]
 +
** [http://www.uniprot.org/uniprot/P34791 P34791]
 +
** [http://www.uniprot.org/uniprot/Q9ZCB7 Q9ZCB7]
 +
** [http://www.uniprot.org/uniprot/P44837 P44837]
 +
** [http://www.uniprot.org/uniprot/P47480 P47480]
 +
** [http://www.uniprot.org/uniprot/P56420 P56420]
 +
** [http://www.uniprot.org/uniprot/P62935 P62935]
 +
** [http://www.uniprot.org/uniprot/P14832 P14832]
 +
** [http://www.uniprot.org/uniprot/P25334 P25334]
 +
** [http://www.uniprot.org/uniprot/P22011 P22011]
 +
** [http://www.uniprot.org/uniprot/P0AFL3 P0AFL3]
 +
** [http://www.uniprot.org/uniprot/P23869 P23869]
 +
** [http://www.uniprot.org/uniprot/P62937 P62937]
 +
** [http://www.uniprot.org/uniprot/P23284 P23284]
 +
** [http://www.uniprot.org/uniprot/P17742 P17742]
 +
** [http://www.uniprot.org/uniprot/P10255 P10255]
 +
** [http://www.uniprot.org/uniprot/P62936 P62936]
 +
** [http://www.uniprot.org/uniprot/P24525 P24525]
 +
** [http://www.uniprot.org/uniprot/P10111 P10111]
 +
** [http://www.uniprot.org/uniprot/P21568 P21568]
 +
** [http://www.uniprot.org/uniprot/P29820 P29820]
 +
** [http://www.uniprot.org/uniprot/P21569 P21569]
 +
** [http://www.uniprot.org/uniprot/P18253 P18253]
 +
** [http://www.uniprot.org/uniprot/P15425 P15425]
 +
** [http://www.uniprot.org/uniprot/P44499 P44499]
 +
** [http://www.uniprot.org/uniprot/P44830 P44830]
 +
** [http://www.uniprot.org/uniprot/P0A850 P0A850]
 +
** [http://www.uniprot.org/uniprot/Q9ZJH5 Q9ZJH5]
 +
** [http://www.uniprot.org/uniprot/P0ABZ6 P0ABZ6]
 +
** [http://www.uniprot.org/uniprot/Q9RXR9 Q9RXR9]
 +
** [http://www.uniprot.org/uniprot/Q9PNC4 Q9PNC4]
 +
** [http://www.uniprot.org/uniprot/P56989 P56989]
 +
** [http://www.uniprot.org/uniprot/P80698 P80698]
 +
** [http://www.uniprot.org/uniprot/Q9RRF0 Q9RRF0]
 +
** [http://www.uniprot.org/uniprot/Q9JQS5 Q9JQS5]
 +
** [http://www.uniprot.org/uniprot/Q57726 Q57726]
 +
** [http://www.uniprot.org/uniprot/P65762 P65762]
 +
** [http://www.uniprot.org/uniprot/O27393 O27393]
 +
** [http://www.uniprot.org/uniprot/Q9JZ74 Q9JZ74]
 +
** [http://www.uniprot.org/uniprot/Q46108 Q46108]
 +
** [http://www.uniprot.org/uniprot/Q9JU68 Q9JU68]
 +
** [http://www.uniprot.org/uniprot/Q9JUB5 Q9JUB5]
 +
** [http://www.uniprot.org/uniprot/P42458 P42458]
 +
** [http://www.uniprot.org/uniprot/P68106 P68106]
 +
** [http://www.uniprot.org/uniprot/Q9QUR7 Q9QUR7]
 +
** [http://www.uniprot.org/uniprot/P0AEM0 P0AEM0]
 +
** [http://www.uniprot.org/uniprot/Q00688 Q00688]
 +
** [http://www.uniprot.org/uniprot/Q7M511 Q7M511]
 +
** [http://www.uniprot.org/uniprot/P30404 P30404]
 +
** [http://www.uniprot.org/uniprot/Q7M541 Q7M541]
 +
** [http://www.uniprot.org/uniprot/P23285 P23285]
 +
** [http://www.uniprot.org/uniprot/P35627 P35627]
 +
** [http://www.uniprot.org/uniprot/P29117 P29117]
 +
** [http://www.uniprot.org/uniprot/P32472 P32472]
 +
** [http://www.uniprot.org/uniprot/Q06118 Q06118]
 +
** [http://www.uniprot.org/uniprot/P25719 P25719]
 +
** [http://www.uniprot.org/uniprot/P35176 P35176]
 +
** [http://www.uniprot.org/uniprot/Q40493 Q40493]
 +
** [http://www.uniprot.org/uniprot/P35137 P35137]
 +
** [http://www.uniprot.org/uniprot/Q53919 Q53919]
 +
** [http://www.uniprot.org/uniprot/Q40673 Q40673]
 +
** [http://www.uniprot.org/uniprot/Q40672 Q40672]
 +
** [http://www.uniprot.org/uniprot/P38911 P38911]
 +
** [http://www.uniprot.org/uniprot/P0A9L5 P0A9L5]
 +
** [http://www.uniprot.org/uniprot/Q48822 Q48822]
 +
** [http://www.uniprot.org/uniprot/Q42406 Q42406]
 +
** [http://www.uniprot.org/uniprot/P42693 P42693]
 +
** [http://www.uniprot.org/uniprot/Q99008 Q99008]
 +
** [http://www.uniprot.org/uniprot/Q8IIK8 Q8IIK8]
 +
** [http://www.uniprot.org/uniprot/Q27745 Q27745]
 +
** [http://www.uniprot.org/uniprot/Q41119 Q41119]
 +
** [http://www.uniprot.org/uniprot/Q43207 Q43207]
 +
** [http://www.uniprot.org/uniprot/Q06205 Q06205]
 +
** [http://www.uniprot.org/uniprot/Q8XCI0 Q8XCI0]
 +
** [http://www.uniprot.org/uniprot/P54985 P54985]
 +
** [http://www.uniprot.org/uniprot/Q9UNP9 Q9UNP9]
 +
** [http://www.uniprot.org/uniprot/Q7M0B2 Q7M0B2]
 +
** [http://www.uniprot.org/uniprot/Q10724 Q10724]
 +
** [http://www.uniprot.org/uniprot/Q38900 Q38900]
 +
** [http://www.uniprot.org/uniprot/Q38936 Q38936]
 +
** [http://www.uniprot.org/uniprot/Q38931 Q38931]
 +
** [http://www.uniprot.org/uniprot/P75454 P75454]
 +
** [http://www.uniprot.org/uniprot/P73789 P73789]
 +
** [http://www.uniprot.org/uniprot/Q8LDP4 Q8LDP4]
 +
** [http://www.uniprot.org/uniprot/Q25340 Q25340]
 +
** [http://www.uniprot.org/uniprot/O68129 O68129]
 +
** [http://www.uniprot.org/uniprot/O49605 O49605]
 +
** [http://www.uniprot.org/uniprot/P34790 P34790]
 +
** [http://www.uniprot.org/uniprot/O04843 O04843]
 +
** [http://www.uniprot.org/uniprot/O65104 O65104]
 +
** [http://www.uniprot.org/uniprot/Q39613 Q39613]
 +
** [http://www.uniprot.org/uniprot/Q41649 Q41649]
 +
** [http://www.uniprot.org/uniprot/Q41651 Q41651]
 +
** [http://www.uniprot.org/uniprot/P52014 P52014]
 +
** [http://www.uniprot.org/uniprot/P52017 P52017]
 +
** [http://www.uniprot.org/uniprot/P52018 P52018]
 +
** [http://www.uniprot.org/uniprot/P52013 P52013]
 +
** [http://www.uniprot.org/uniprot/Q9XXI7 Q9XXI7]
 +
** [http://www.uniprot.org/uniprot/P52009 P52009]
 +
** [http://www.uniprot.org/uniprot/P52015 P52015]
 +
** [http://www.uniprot.org/uniprot/P52011 P52011]
 +
** [http://www.uniprot.org/uniprot/Q18445 Q18445]
 +
** [http://www.uniprot.org/uniprot/O54168 O54168]
 +
** [http://www.uniprot.org/uniprot/Q9XA08 Q9XA08]
 +
** [http://www.uniprot.org/uniprot/P87051 P87051]
 +
** [http://www.uniprot.org/uniprot/O74729 O74729]
 +
** [http://www.uniprot.org/uniprot/O94273 O94273]
 +
** [http://www.uniprot.org/uniprot/O50586 O50586]
 +
** [http://www.uniprot.org/uniprot/O93778 O93778]
 +
** [http://www.uniprot.org/uniprot/Q38867 Q38867]
 +
** [http://www.uniprot.org/uniprot/Q9LY53 Q9LY53]
 +
** [http://www.uniprot.org/uniprot/Q96416 Q96416]
 +
** [http://www.uniprot.org/uniprot/Q96417 Q96417]
 +
** [http://www.uniprot.org/uniprot/O64456 O64456]
 +
** [http://www.uniprot.org/uniprot/Q9XF12 Q9XF12]
 +
** [http://www.uniprot.org/uniprot/Q9SKQ0 Q9SKQ0]
 +
** [http://www.uniprot.org/uniprot/Q9SP02 Q9SP02]
 +
** [http://www.uniprot.org/uniprot/P77949 P77949]
 +
** [http://www.uniprot.org/uniprot/O23727 O23727]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=at2g38730}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase}}
 +
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase-like_2}}
 +
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase_cyclophilin_type}}
 +
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase_b}}
 +
{{#set: common name=peptidyl-prolyl_cis-transisomerase}}
 +
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase_d-_partial}}
 +
{{#set: common name=peptidylprolyl_isomerase}}
 +
{{#set: common name=cyclophilin}}
 +
{{#set: common name=wd40_repeat-containing_protein}}
 +
{{#set: common name=mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase}}
 +
{{#set: common name=heat_shock_protein_70}}
 +
{{#set: common name=cyclophlin_abh}}
 +
{{#set: common name=outer_envelope_protein_chloroplastic}}
 +
{{#set: common name=amp-dependent_synthetase_and_ligase}}
 +
{{#set: common name=peptidylprolyl_cistransisomeraseppi1}}
 +
{{#set: common name=peptidyl-prolyl_isomerase}}
 +
{{#set: common name=peptidyl-prolyl_cis-transisomerasec}}
 +
{{#set: common name=nuclear_elongation_and_deformation_protein_1}}
 +
{{#set: common name=nuclear_cap-binding_protein}}
 +
{{#set: ec number=EC-5.2.1.8}}
 +
{{#set: gene associated=Tiso_gene_6211|Tiso_gene_13541|Tiso_gene_3939|Tiso_gene_19510|Tiso_gene_14322|Tiso_gene_4273|Tiso_gene_19431|Tiso_gene_303|Tiso_gene_565|Tiso_gene_11831|Tiso_gene_2245|Tiso_gene_3172|Tiso_gene_14583|Tiso_gene_17484|Tiso_gene_2166|Tiso_gene_11161|Tiso_gene_13636|Tiso_gene_15556|Tiso_gene_7718|Tiso_gene_18879|Tiso_gene_17027|Tiso_gene_19799|Tiso_gene_8216|Tiso_gene_10560|Tiso_gene_5934|Tiso_gene_7717|Tiso_gene_19642|Tiso_gene_20539|Tiso_gene_11832|Tiso_gene_20316|Tiso_gene_14085|Tiso_gene_9975|Tiso_gene_19432|Tiso_gene_5022|Tiso_gene_17230|Tiso_gene_17722|Tiso_gene_12758|Tiso_gene_5063|Tiso_gene_18421|Tiso_gene_8055|Tiso_gene_10268|Tiso_gene_9591|Tiso_gene_18505|Tiso_gene_4076|Tiso_gene_11932|Tiso_gene_11070|Tiso_gene_9976|Tiso_gene_17352|Tiso_gene_5023|Tiso_gene_13794|Tiso_gene_15858|Tiso_gene_9733|Tiso_gene_8283|Tiso_gene_19952|Tiso_gene_66|Tiso_gene_8435|Tiso_gene_5207|Tiso_gene_18908|Tiso_gene_10084|Tiso_gene_19998|Tiso_gene_8433|Tiso_gene_4395|Tiso_gene_14514|Tiso_gene_7896|Tiso_gene_7386|Tiso_gene_15481|Tiso_gene_6629|Tiso_gene_8543|Tiso_gene_8905|Tiso_gene_10233|Tiso_gene_15137|Tiso_gene_14567|Tiso_gene_1404|Tiso_gene_13872|Tiso_gene_7851|Tiso_gene_14086|Tiso_gene_18813|Tiso_gene_3171|Tiso_gene_3721|Tiso_gene_11786|Tiso_gene_856|Tiso_gene_9531|Tiso_gene_8110|Tiso_gene_8432|Tiso_gene_18320|Tiso_gene_2192|Tiso_gene_8434|Tiso_gene_15138|Tiso_gene_15555|Tiso_gene_19919|Tiso_gene_17206|Tiso_gene_10399|Tiso_gene_18321|Tiso_gene_9105|Tiso_gene_9648|Tiso_gene_8436|Tiso_gene_18283|Tiso_gene_3109|Tiso_gene_857}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:00, 21 March 2018

Reaction PEPTIDYLPROLYL-ISOMERASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • at2g38730
    • ORF
    • peptidyl-prolyl_cis-trans_isomerase
    • peptidyl-prolyl_cis-trans_isomerase-like_2
    • peptidyl-prolyl_cis-trans_isomerase_cyclophilin_type
    • peptidyl-prolyl_cis-trans_isomerase_b
    • peptidyl-prolyl_cis-transisomerase
    • peptidyl-prolyl_cis-trans_isomerase_d-_partial
    • peptidylprolyl_isomerase
    • cyclophilin
    • wd40_repeat-containing_protein
    • mg&lt_sup&gt2+&lt_sup&gt-dependent_phosphatidate_phosphatase
    • heat_shock_protein_70
    • cyclophlin_abh
    • outer_envelope_protein_chloroplastic
    • amp-dependent_synthetase_and_ligase
    • peptidylprolyl_cistransisomeraseppi1
    • peptidyl-prolyl_isomerase
    • peptidyl-prolyl_cis-transisomerasec
    • nuclear_elongation_and_deformation_protein_1
    • nuclear_cap-binding_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [protein]-L-proline (ω = 180)[c] <=> 1 a [protein]-L-proline (ω = 0)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links















Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Cis-cis-D7-19-C38-2-ACPs&oldid=31784"