Difference between revisions of "DNA-containing-abasic-Sites"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_c...")
(Created page with "Category:Gene == Gene Tiso_gene_5668 == * right end position: ** 8549 * transcription direction: ** NEGATIVE * left end position: ** 7303 * centisome position: ** 55.82906...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] ==
+
== Gene Tiso_gene_5668 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 8549
−
* common name:
+
* transcription direction:
−
** phosphoglycerate_chloroplastic
+
** NEGATIVE
−
** phosphoglycerate_kinase
+
* left end position:
−
* ec number:
+
** 7303
−
** [http://enzyme.expasy.org/EC/2.7.2.3 EC-2.7.2.3]
+
* centisome position:
 +
** 55.829067   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[2.7.9.3-RXN]]
−
** 1 [[ATP]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[DPG]][c] '''+''' 1 [[ADP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 ATP[c] '''+''' 1 3-phospho-D-glycerate[c] '''<=>''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 ADP[c]
+
* Reaction: [[NADH-DEHYDROGENASE-RXN]]
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_3527]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_18263]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12104]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3526]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14642]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18264]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
+
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
−
** '''8''' reactions found over '''12''' reactions in the full pathway
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
+
−
** '''8''' reactions found over '''11''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY0-901]]
 +
* [[PWY-6281]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=8549}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14801 14801]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=7303}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
+
{{#set: centisome position=55.829067    }}
−
* UNIPROT:
+
{{#set: reaction associated=2.7.9.3-RXN|NADH-DEHYDROGENASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P11977 P11977]
+
{{#set: pathway associated=PWY0-901|PWY-6281}}
−
** [http://www.uniprot.org/uniprot/P09411 P09411]
+
−
** [http://www.uniprot.org/uniprot/P09041 P09041]
+
−
** [http://www.uniprot.org/uniprot/P07205 P07205]
+
−
** [http://www.uniprot.org/uniprot/P16617 P16617]
+
−
** [http://www.uniprot.org/uniprot/Q37743 Q37743]
+
−
** [http://www.uniprot.org/uniprot/Q58058 Q58058]
+
−
** [http://www.uniprot.org/uniprot/P56154 P56154]
+
−
** [http://www.uniprot.org/uniprot/O29119 O29119]
+
−
** [http://www.uniprot.org/uniprot/Q01655 Q01655]
+
−
** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
+
−
** [http://www.uniprot.org/uniprot/P47542 P47542]
+
−
** [http://www.uniprot.org/uniprot/O27121 O27121]
+
−
** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
+
−
** [http://www.uniprot.org/uniprot/P40924 P40924]
+
−
** [http://www.uniprot.org/uniprot/P43726 P43726]
+
−
** [http://www.uniprot.org/uniprot/O66519 O66519]
+
−
** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
+
−
** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
+
−
** [http://www.uniprot.org/uniprot/P36204 P36204]
+
−
** [http://www.uniprot.org/uniprot/Q59181 Q59181]
+
−
** [http://www.uniprot.org/uniprot/P50319 P50319]
+
−
** [http://www.uniprot.org/uniprot/P50310 P50310]
+
−
** [http://www.uniprot.org/uniprot/P51903 P51903]
+
−
** [http://www.uniprot.org/uniprot/P18912 P18912]
+
−
** [http://www.uniprot.org/uniprot/P41757 P41757]
+
−
** [http://www.uniprot.org/uniprot/P27362 P27362]
+
−
** [http://www.uniprot.org/uniprot/P24269 P24269]
+
−
** [http://www.uniprot.org/uniprot/P00560 P00560]
+
−
** [http://www.uniprot.org/uniprot/P25055 P25055]
+
−
** [http://www.uniprot.org/uniprot/Q01604 Q01604]
+
−
** [http://www.uniprot.org/uniprot/P00558 P00558]
+
−
** [http://www.uniprot.org/uniprot/P07377 P07377]
+
−
** [http://www.uniprot.org/uniprot/P07378 P07378]
+
−
** [http://www.uniprot.org/uniprot/P14828 P14828]
+
−
** [http://www.uniprot.org/uniprot/P09404 P09404]
+
−
** [http://www.uniprot.org/uniprot/P29408 P29408]
+
−
** [http://www.uniprot.org/uniprot/P20972 P20972]
+
−
** [http://www.uniprot.org/uniprot/P20971 P20971]
+
−
** [http://www.uniprot.org/uniprot/P24590 P24590]
+
−
** [http://www.uniprot.org/uniprot/P29409 P29409]
+
−
** [http://www.uniprot.org/uniprot/P33161 P33161]
+
−
** [http://www.uniprot.org/uniprot/P29405 P29405]
+
−
** [http://www.uniprot.org/uniprot/P50317 P50317]
+
−
** [http://www.uniprot.org/uniprot/P50315 P50315]
+
−
** [http://www.uniprot.org/uniprot/P29407 P29407]
+
−
** [http://www.uniprot.org/uniprot/P61884 P61884]
+
−
** [http://www.uniprot.org/uniprot/Q42542 Q42542]
+
−
** [http://www.uniprot.org/uniprot/P50318 P50318]
+
−
** [http://www.uniprot.org/uniprot/P46712 P46712]
+
−
** [http://www.uniprot.org/uniprot/P78018 P78018]
+
−
** [http://www.uniprot.org/uniprot/Q49073 Q49073]
+
−
** [http://www.uniprot.org/uniprot/Q42961 Q42961]
+
−
** [http://www.uniprot.org/uniprot/Q42962 Q42962]
+
−
** [http://www.uniprot.org/uniprot/O81394 O81394]
+
−
** [http://www.uniprot.org/uniprot/P41758 P41758]
+
−
** [http://www.uniprot.org/uniprot/O32756 O32756]
+
−
** [http://www.uniprot.org/uniprot/P38667 P38667]
+
−
** [http://www.uniprot.org/uniprot/P08966 P08966]
+
−
** [http://www.uniprot.org/uniprot/P08967 P08967]
+
−
** [http://www.uniprot.org/uniprot/P0A799 P0A799]
+
−
** [http://www.uniprot.org/uniprot/P09188 P09188]
+
−
** [http://www.uniprot.org/uniprot/P14228 P14228]
+
−
** [http://www.uniprot.org/uniprot/P08891 P08891]
+
−
** [http://www.uniprot.org/uniprot/P08892 P08892]
+
−
** [http://www.uniprot.org/uniprot/P08893 P08893]
+
−
** [http://www.uniprot.org/uniprot/P12782 P12782]
+
−
** [http://www.uniprot.org/uniprot/P12783 P12783]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=phosphoglycerate_chloroplastic}}
+
−
{{#set: common name=phosphoglycerate_kinase}}
+
−
{{#set: ec number=EC-2.7.2.3}}
+
−
{{#set: gene associated=Tiso_gene_3527|Tiso_gene_18263|Tiso_gene_12104|Tiso_gene_3526|Tiso_gene_14642|Tiso_gene_18264}}
+
−
{{#set: in pathway=PWY-1042|PWY-7003|SUCSYN-PWY|GLYCOLYSIS|PWY-6901|P124-PWY|PWY-6886|CALVIN-PWY|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|P122-PWY|P185-PWY|PWY-5484|PWY66-399}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:27, 21 March 2018

Gene Tiso_gene_5668

  • right end position:
    • 8549
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 7303
  • centisome position:
    • 55.829067
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DNA-containing-abasic-Sites&oldid=34217"