Difference between revisions of "MANNKIN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-773 RXN-773] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1.14...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-773 RXN-773] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** flavin biosynthesis III (fungi)
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** [http://enzyme.expasy.org/EC/1.14.13 EC-1.14.13]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[DIOHBUTANONEPSYN-RXN]]
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** 1 [[CPD-710]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-712]][c] '''+''' 1 [[NADP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14275]]
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** 1 campestanol[c] '''+''' 1 H+[c] '''+''' 1 oxygen[c] '''+''' 1 NADPH[c] '''=>''' 1 H2O[c] '''+''' 1 6-deoxocathasterone[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_19932]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3577]]
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* [[FADSYN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 4 associated gene(s):
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* Gene: [[Tiso_gene_8263]]
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*** [[Tiso_gene_5393]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_5392]]
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== Pathways  ==
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*** [[Tiso_gene_7479]]
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* [[PWY-699]], brassinosteroid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-699 PWY-699]
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*** [[Tiso_gene_1086]]
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** '''11''' reactions found over '''25''' reactions in the full pathway
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** 4 reconstruction source(s) associated:
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* [[PWY-2582]], brassinosteroid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2582 PWY-2582]
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*** [[annotation-in-silico_annotation]]
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** '''7''' reactions found over '''21''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* Category: [[orthology]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[GTP-CYCLOHYDRO-II-RXN]]
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*** Tool: [[pantograph]]
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** 3 associated gene(s):
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*** [[Tiso_gene_14275]]
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*** [[Tiso_gene_19932]]
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*** [[Tiso_gene_8035]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVIN-SYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13686]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RIBOFLAVINKIN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_7479]]
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*** [[Tiso_gene_1086]]
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*** [[Tiso_gene_16837]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-10058]]
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** 1 associated gene(s):
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*** [[Tiso_gene_17798]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=LUMAZINESYN-RXN LUMAZINESYN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RIBOPHOSPHAT-RXN RIBOPHOSPHAT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10057 RXN-10057]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: common name=flavin biosynthesis III (fungi)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07454 R07454]
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{{#set: reaction found=6}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=9}}
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{{#set: ec number=EC-1.14.13}}
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{{#set: completion rate=67.0}}
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{{#set: gene associated=Tiso_gene_3577|Tiso_gene_8263}}
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{{#set: in pathway=PWY-699|PWY-2582}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 15:27, 21 March 2018

Reaction RXN-773

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 campestanol[c] + 1 H+[c] + 1 oxygen[c] + 1 NADPH[c] => 1 H2O[c] + 1 6-deoxocathasterone[c] + 1 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-699, brassinosteroid biosynthesis I: PWY-699
    • 11 reactions found over 25 reactions in the full pathway
  • PWY-2582, brassinosteroid biosynthesis II: PWY-2582
    • 7 reactions found over 21 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=MANNKIN-RXN&oldid=34228"