Difference between revisions of "RME298"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin_synthase * ec nu...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CYTIDINE CYTIDINE] == * smiles: ** C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O * common name: ** c...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CYTIDINE CYTIDINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O
 
* common name:
 
* common name:
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** biotin_synthase
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** cytidine
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6]
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** InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N
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* molecular weight:
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** 243.219   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN0-361]]
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** 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c]
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* [[ATDTD]]
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* With common name(s):
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* [[DTTGY]]
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** 1 a sulfurated [sulfur carrier][c] '''+''' 2 S-adenosyl-L-methionine[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''+''' 1 dethiobiotin[c] '''=>''' 1 biotin[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 L-methionine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c]
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* [[ATDTDm]]
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* [[CYTIDEAM2-RXN]]
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== Genes associated with this reaction  ==
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* [[DCTCP]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ATCY]]
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* [[Tiso_gene_10345]]
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* [[DGTCY]]
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** IN-SILICO_ANNOTATION
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* [[DATCY]]
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***AUTOMATED-NAME-MATCH
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* [[CYTIKIN-RXN]]
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** EXPERIMENTAL_ANNOTATION
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* [[ITCY]]
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***AUTOMATED-NAME-MATCH
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* [[DUTCP]]
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** [[pantograph]]-[[esiliculosus]]
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* [[UTCY]]
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== Pathways  ==
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* [[GTCY]]
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* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
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== Reaction(s) known to produce the compound ==
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-14026]]
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* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
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* [[DTTGY]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[DTNH]]
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== Reconstruction information  ==
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* [[DTTUP]]
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* Category: [[orthology]]
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== Reaction(s) of unknown directionality ==
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 65-46-3
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22060 22060]
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* BIGG : cytd
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* LIGAND-RXN:
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* DRUGBANK : DB02097
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** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6175 6175]
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** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
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* HMDB : HMDB00089
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** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P53557 P53557]
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** [http://www.genome.jp/dbget-bin/www_bget?C00475 C00475]
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** [http://www.uniprot.org/uniprot/O67104 O67104]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P44987 P44987]
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** [http://www.chemspider.com/Chemical-Structure.5940.html 5940]
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** [http://www.uniprot.org/uniprot/Q58692 Q58692]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P0A506 P0A506]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17562 17562]
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** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
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* METABOLIGHTS : MTBLC17562
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** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
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{{#set: smiles=C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O}}
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** [http://www.uniprot.org/uniprot/P46396 P46396]
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{{#set: common name=cytidine}}
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** [http://www.uniprot.org/uniprot/Q47862 Q47862]
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{{#set: inchi key=InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N}}
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** [http://www.uniprot.org/uniprot/P19206 P19206]
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{{#set: molecular weight=243.219    }}
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** [http://www.uniprot.org/uniprot/P32451 P32451]
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{{#set: consumed by=RXN0-361|ATDTD|DTTGY|ATDTDm|CYTIDEAM2-RXN|DCTCP|ATCY|DGTCY|DATCY|CYTIKIN-RXN|ITCY|DUTCP|UTCY|GTCY}}
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** [http://www.uniprot.org/uniprot/P54967 P54967]
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{{#set: produced by=RXN-14026|DTTGY|DTNH|DTTUP}}
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** [http://www.uniprot.org/uniprot/P46715 P46715]
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** [http://www.uniprot.org/uniprot/P73538 P73538]
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** [http://www.uniprot.org/uniprot/P12996 P12996]
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** [http://www.uniprot.org/uniprot/O59778 O59778]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=biotin_synthase}}
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{{#set: ec number=EC-2.8.1.6}}
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{{#set: gene associated=Tiso_gene_10345}}
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{{#set: in pathway=PWY0-1507|PWY-7380}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:38, 21 March 2018

Metabolite CYTIDINE

  • smiles:
    • C(C2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))O
  • common name:
    • cytidine
  • inchi key:
    • InChIKey=UHDGCWIWMRVCDJ-XVFCMESISA-N
  • molecular weight:
    • 243.219
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 65-46-3
  • BIGG : cytd
  • DRUGBANK : DB02097
  • PUBCHEM:
  • HMDB : HMDB00089
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC17562




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