Difference between revisions of "Tiso gene 5505"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12014 CPD-12014] == * smiles: ** CC(=O)NCCC1(=CNC2(C1=CC(OC)=C(O)C=2)) * inchi key: ** InCh...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** inosine_triphosph...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12014 CPD-12014] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
−
* smiles:
+
* direction:
−
** CC(=O)NCCC1(=CNC2(C1=CC(OC)=C(O)C=2))
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=OMYMRCXOJJZYKE-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** 6-hydroxymelatonin
+
** inosine_triphosphate
−
* molecular weight:
+
* ec number:
−
** 248.281   
+
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
 +
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-11058]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DUMP]][c]
−
* [[RXN-11056]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 dUTP[c] '''+''' 1 H2O[c] '''=>''' 1 diphosphate[c] '''+''' 1 H+[c] '''+''' 1 dUMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_18793]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_18792]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=1864 1864]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
−
* HMDB : HMDB04081
+
* LIGAND-RXN:
−
* LIGAND-CPD:
+
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
−
** [http://www.genome.jp/dbget-bin/www_bget?C05643 C05643]
+
* UNIPROT:
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
−
** [http://www.chemspider.com/Chemical-Structure.1794.html 1794]
+
** [http://www.uniprot.org/uniprot/P33316 P33316]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/O15923 O15923]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=2198 2198]
+
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
−
* METABOLIGHTS : MTBLC2198
+
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
−
{{#set: smiles=CC(=O)NCCC1(=CNC2(C1=CC(OC)=C(O)C=2))}}
+
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
−
{{#set: inchi key=InChIKey=OMYMRCXOJJZYKE-UHFFFAOYSA-N}}
+
** [http://www.uniprot.org/uniprot/P43792 P43792]
−
{{#set: common name=6-hydroxymelatonin}}
+
** [http://www.uniprot.org/uniprot/P32518 P32518]
−
{{#set: molecular weight=248.281    }}
+
** [http://www.uniprot.org/uniprot/P68635 P68635]
−
{{#set: consumed by=RXN-11058}}
+
** [http://www.uniprot.org/uniprot/P68634 P68634]
−
{{#set: produced by=RXN-11056}}
+
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 +
** [http://www.uniprot.org/uniprot/P03195 P03195]
 +
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 +
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 +
** [http://www.uniprot.org/uniprot/P33317 P33317]
 +
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 +
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=inosine_triphosphate}}
 +
{{#set: ec number=EC-3.6.1.23}}
 +
{{#set: ec number=EC-3.6.1.9}}
 +
{{#set: gene associated=Tiso_gene_18793|Tiso_gene_18792}}
 +
{{#set: in pathway=PWY-7206|PWY-7184|PWY-7187|PWY-6545|PWY0-166}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-athaliana}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:45, 21 March 2018

Reaction DUTP-PYROP-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • inosine_triphosphate
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dUTP[c] + 1 H2O[c] => 1 diphosphate[c] + 1 H+[c] + 1 dUMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation: PWY-7206
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5505&oldid=36066"