Difference between revisions of "D-SEDOHEPTULOSE-1-7-P2"

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(Created page with "Category:Gene == Gene Tiso_gene_9591 == * left end position: ** 5615 * transcription direction: ** POSITIVE * right end position: ** 8381 * centisome position: ** 60.92004...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10815 RXN-10815] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-oxo-3-phenylpropanoate di...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_9591 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10815 RXN-10815] ==
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* left end position:
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* direction:
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** 5615
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** 2-oxo-3-phenylpropanoate dioxygenase
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* right end position:
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** ORF
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** 8381
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** 4-hydroxyphenylpyruvate_dioxygenase
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* centisome position:
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* ec number:
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** 60.92004   
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** [http://enzyme.expasy.org/EC/1.13.11.27 EC-1.13.11.27]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''=>''' 1 [[CPD-11495]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 oxygen[c] '''+''' 1 2-oxo-3-phenylpropanoate[c] '''=>''' 1 2-hydroxyphenylacetate[c] '''+''' 1 CO2[c]
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***ec-number
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18328]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18976]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18977]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5615}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31107 31107]
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{{#set: right end position=8381}}
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* LIGAND-RXN:
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{{#set: centisome position=60.92004    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01372 R01372]
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{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-oxo-3-phenylpropanoate dioxygenase}}
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{{#set: common name=ORF}}
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{{#set: common name=4-hydroxyphenylpyruvate_dioxygenase}}
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{{#set: ec number=EC-1.13.11.27}}
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{{#set: gene associated=Tiso_gene_18328|Tiso_gene_18976|Tiso_gene_18977}}
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{{#set: in pathway=PWY-6318}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:59, 21 March 2018

Reaction RXN-10815

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-oxo-3-phenylpropanoate dioxygenase
    • ORF
    • 4-hydroxyphenylpyruvate_dioxygenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6318, L-phenylalanine degradation IV (mammalian, via side chain): PWY-6318
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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