Difference between revisions of "3-Hydroxyglutaryl-ACP-methyl-ester"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
 +
** d-3-phosphoglycerate_dehydrogenase
 
** ORF
 
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
+
** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[VAL-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-valine[c] '''+''' 1 a tRNAval[c] '''=>''' 1 AMP[c] '''+''' 1 an L-valyl-[tRNAval][c] '''+''' 1 diphosphate[c]
+
** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1372]]
+
* Gene: [[Tiso_gene_6223]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_8041]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_6224]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_17123]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15687]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_15686]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18904]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P28350 P28350]
+
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
−
** [http://www.uniprot.org/uniprot/P36420 P36420]
+
** [http://www.uniprot.org/uniprot/P43885 P43885]
−
** [http://www.uniprot.org/uniprot/P56000 P56000]
+
** [http://www.uniprot.org/uniprot/P35136 P35136]
−
** [http://www.uniprot.org/uniprot/O51680 O51680]
+
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
−
** [http://www.uniprot.org/uniprot/O67411 O67411]
+
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
−
** [http://www.uniprot.org/uniprot/O83998 O83998]
+
** [http://www.uniprot.org/uniprot/P40510 P40510]
−
** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
+
** [http://www.uniprot.org/uniprot/P40054 P40054]
−
** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
+
** [http://www.uniprot.org/uniprot/O49485 O49485]
−
** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
+
** [http://www.uniprot.org/uniprot/P87228 P87228]
−
** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
+
** [http://www.uniprot.org/uniprot/O04130 O04130]
−
** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q58413 Q58413]
+
{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P43834 P43834]
+
−
** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
+
−
** [http://www.uniprot.org/uniprot/O84304 O84304]
+
−
** [http://www.uniprot.org/uniprot/P47576 P47576]
+
−
** [http://www.uniprot.org/uniprot/Q94678 Q94678]
+
−
** [http://www.uniprot.org/uniprot/Q04462 Q04462]
+
−
** [http://www.uniprot.org/uniprot/P26640 P26640]
+
−
** [http://www.uniprot.org/uniprot/Q05873 Q05873]
+
−
** [http://www.uniprot.org/uniprot/Q26177 Q26177]
+
−
** [http://www.uniprot.org/uniprot/P75304 P75304]
+
−
** [http://www.uniprot.org/uniprot/Q49021 Q49021]
+
−
** [http://www.uniprot.org/uniprot/P11931 P11931]
+
−
** [http://www.uniprot.org/uniprot/P07806 P07806]
+
−
** [http://www.uniprot.org/uniprot/P07118 P07118]
+
−
** [http://www.uniprot.org/uniprot/O77443 O77443]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-6.1.1.9}}
+
{{#set: ec number=EC-1.1.1.95}}
−
{{#set: gene associated=Tiso_gene_1372|Tiso_gene_8041}}
+
{{#set: gene associated=Tiso_gene_6223|Tiso_gene_6224|Tiso_gene_17123|Tiso_gene_15687|Tiso_gene_15686|Tiso_gene_18904}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: in pathway=SERSYN-PWY}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:01, 21 March 2018

Reaction PGLYCDEHYDROG-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • d-3-phosphoglycerate_dehydrogenase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-phospho-D-glycerate[c] + 1 NAD+[c] <=> 1 H+[c] + 1 3-phospho-hydroxypyruvate[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SERSYN-PWY, L-serine biosynthesis: SERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3-Hydroxyglutaryl-ACP-methyl-ester&oldid=38053"