Difference between revisions of "Cis-delta-3-decenoyl-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11841 RXN-11841] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridine_synthase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14187 RXN-14187] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11841 RXN-11841] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14187 RXN-14187] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trna_pseudouridine_synthase
+
** ORF
−
** trna_pseudouridinesynthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.4.99.27 EC-5.4.99.27]
+
** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[tRNA-uridine13]][c] '''=>''' 1 [[tRNA-pseudouridine13]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[DCDP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[DCMP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a uridine13 in tRNA[c] '''=>''' 1 a pseudouridine13 in tRNA[c]
+
** 1 H2O[c] '''+''' 1 dCDP[c] '''=>''' 1 phosphate[c] '''+''' 1 dCMP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9833]]
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* Gene: [[Tiso_gene_20236]]
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_12899]]
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* [[Tiso_gene_11913]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: EC-NUMBER
−
***AUTOMATED-NAME-MATCH
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_4021]]
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*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4020]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_18959]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_2988]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_19622]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trna_pseudouridine_synthase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=trna_pseudouridinesynthase}}
+
{{#set: ec number=EC-3.6.1.6}}
−
{{#set: ec number=EC-5.4.99.27}}
+
{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
−
{{#set: gene associated=Tiso_gene_9833|Tiso_gene_11913|Tiso_gene_4021|Tiso_gene_4020|Tiso_gene_18959|Tiso_gene_2988|Tiso_gene_19622}}
+
{{#set: in pathway=PWY-7210}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 16:03, 21 March 2018

Reaction RXN-14187

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 dCDP[c] => 1 phosphate[c] + 1 dCMP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Cis-delta-3-decenoyl-ACPs&oldid=38440"