Difference between revisions of "Tiso gene 1398"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10777 RXN-10777] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Tiso_gene_1398 == * right end position: ** 21490 * transcription direction: ** POSITIVE * left end position: ** 16012 * centisome position: ** 67.046...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10777 RXN-10777] ==
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== Gene Tiso_gene_1398 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 21490
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.8.2.1 EC-2.8.2.1]
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** POSITIVE
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* left end position:
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** 16012
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* centisome position:
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** 67.04631   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.23-RXN]]
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** 1 [[PAPS]][c] '''+''' 1 [[SEROTONIN]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-11665]][c] '''+''' 1 [[3-5-ADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 3'-phosphoadenylyl-sulfate[c] '''+''' 1 serotonin[c] '''=>''' 1 H+[c] '''+''' 1 serotonin O-sulfate[c] '''+''' 1 adenosine 3',5'-bisphosphate[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[BETAGALACTOSID-RXN]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_5505]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[KETOLACTOSE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12398]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12399]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[RXN-12400]]
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* [[PWY-6313]], serotonin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313]
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** Source: [[annotation-in-silico_annotation]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* [[PWY-6807]]
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* [[BGALACT-PWY]]
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* [[LACTOSEUTIL-PWY]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=21490}}
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{{#set: ec number=EC-2.8.2.1}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: gene associated=Tiso_gene_5505}}
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{{#set: left end position=16012}}
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{{#set: in pathway=PWY-6313}}
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{{#set: centisome position=67.04631    }}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction associated=3.2.1.23-RXN|BETAGALACTOSID-RXN|KETOLACTOSE-RXN|RXN-12398|RXN-12399|RXN-12400}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: pathway associated=PWY-6807|BGALACT-PWY|LACTOSEUTIL-PWY}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:09, 21 March 2018

Gene Tiso_gene_1398

  • right end position:
    • 21490
  • transcription direction:
    • POSITIVE
  • left end position:
    • 16012
  • centisome position:
    • 67.04631
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1398&oldid=39792"