Difference between revisions of "RXN-8772"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8772 RXN-8772] == * direction: ** REVERSIBLE * common name: ** oxidoreductase ** aldo_keto_redu...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8772 RXN-8772] ==
* taxonomic range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** REVERSIBLE
 
* common name:
 
* common name:
** pyrimidine deoxyribonucleotides de novo biosynthesis IV
+
** oxidoreductase
 +
** aldo_keto_reductase
 +
** aldose_reductase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.21 EC-1.1.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''6''' reactions found over '''7''' reactions in the full pathway
+
* With identifiers:
* [[CDPREDUCT-RXN]]
+
** 1 [[NADP]][c] '''+''' 1 [[L-ARABITOL]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[L-arabinopyranose]][c] '''+''' 1 [[NADPH]][c]
** 4 associated gene(s):
+
* With common name(s):
*** [[Tiso_gene_10617]]
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**
*** [[Tiso_gene_9916]]
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== Genes associated with this reaction  ==
*** [[Tiso_gene_9915]]
+
Genes have been associated with this reaction based on different elements listed below.
*** [[Tiso_gene_10138]]
+
* Gene: [[Tiso_gene_8988]]
** 6 reconstruction source(s) associated:
+
** Source: [[annotation-in-silico_annotation]]
*** [[annotation-experimental_annotation]]
+
*** Assignment: EC-NUMBER
*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_7799]]
*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
*** [[orthology-athaliana]]
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*** Assignment: AUTOMATED-NAME-MATCH
*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_7800]]
*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
* [[DCDPKIN-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
** 6 associated gene(s):
+
* Gene: [[Tiso_gene_18748]]
*** [[Tiso_gene_9290]]
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** Source: [[annotation-in-silico_annotation]]
*** [[Tiso_gene_17271]]
+
*** Assignment: EC-NUMBER
*** [[Tiso_gene_17272]]
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== Pathways  ==
*** [[Tiso_gene_195]]
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* [[PWY-5515]], L-arabinose degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5515 PWY-5515]
*** [[Tiso_gene_18224]]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
*** [[Tiso_gene_16529]]
+
== Reconstruction information  ==
** 6 reconstruction source(s) associated:
+
* Category: [[annotation]]
*** [[annotation-experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DTDPKIN-RXN]]
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** 6 associated gene(s):
+
*** [[Tiso_gene_18224]]
+
*** [[Tiso_gene_16529]]
+
*** [[Tiso_gene_195]]
+
*** [[Tiso_gene_17271]]
+
*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_9290]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[DTMPKI-RXN]]
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** 1 associated gene(s):
+
*** [[Tiso_gene_3755]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-12195]]
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** 101 associated gene(s):
+
*** [[Tiso_gene_1960]]
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*** [[Tiso_gene_11098]]
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*** [[Tiso_gene_12899]]
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*** [[Tiso_gene_2924]]
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*** [[Tiso_gene_14226]]
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*** [[Tiso_gene_674]]
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*** [[Tiso_gene_8601]]
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*** [[Tiso_gene_8584]]
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*** [[Tiso_gene_9959]]
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*** [[Tiso_gene_2929]]
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*** [[Tiso_gene_9423]]
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*** [[Tiso_gene_873]]
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*** [[Tiso_gene_8763]]
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*** [[Tiso_gene_9004]]
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*** [[Tiso_gene_14816]]
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*** [[Tiso_gene_5529]]
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*** [[Tiso_gene_4192]]
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*** [[Tiso_gene_8859]]
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*** [[Tiso_gene_14227]]
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*** [[Tiso_gene_9234]]
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*** [[Tiso_gene_38]]
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*** [[Tiso_gene_2889]]
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*** [[Tiso_gene_4194]]
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*** [[Tiso_gene_15043]]
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*** [[Tiso_gene_537]]
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*** [[Tiso_gene_4026]]
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*** [[Tiso_gene_14646]]
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*** [[Tiso_gene_195]]
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*** [[Tiso_gene_3653]]
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*** [[Tiso_gene_1444]]
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*** [[Tiso_gene_8949]]
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*** [[Tiso_gene_17616]]
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*** [[Tiso_gene_546]]
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*** [[Tiso_gene_13738]]
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*** [[Tiso_gene_538]]
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*** [[Tiso_gene_2449]]
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*** [[Tiso_gene_1959]]
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*** [[Tiso_gene_7387]]
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*** [[Tiso_gene_2447]]
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*** [[Tiso_gene_20353]]
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*** [[Tiso_gene_5166]]
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*** [[Tiso_gene_4596]]
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*** [[Tiso_gene_2448]]
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*** [[Tiso_gene_5525]]
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*** [[Tiso_gene_12148]]
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*** [[Tiso_gene_20327]]
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*** [[Tiso_gene_11012]]
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*** [[Tiso_gene_2176]]
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*** [[Tiso_gene_13325]]
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*** [[Tiso_gene_13268]]
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*** [[Tiso_gene_12149]]
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*** [[Tiso_gene_2451]]
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*** [[Tiso_gene_6614]]
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*** [[Tiso_gene_2897]]
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*** [[Tiso_gene_4436]]
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*** [[Tiso_gene_623]]
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*** [[Tiso_gene_9926]]
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*** [[Tiso_gene_6181]]
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*** [[Tiso_gene_16478]]
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*** [[Tiso_gene_6180]]
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*** [[Tiso_gene_1984]]
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*** [[Tiso_gene_2452]]
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*** [[Tiso_gene_15465]]
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*** [[Tiso_gene_4092]]
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*** [[Tiso_gene_7745]]
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*** [[Tiso_gene_829]]
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*** [[Tiso_gene_250]]
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*** [[Tiso_gene_1541]]
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*** [[Tiso_gene_199]]
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*** [[Tiso_gene_7123]]
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*** [[Tiso_gene_10282]]
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*** [[Tiso_gene_9114]]
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*** [[Tiso_gene_2450]]
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*** [[Tiso_gene_14474]]
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*** [[Tiso_gene_8461]]
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*** [[Tiso_gene_4437]]
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*** [[Tiso_gene_4726]]
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*** [[Tiso_gene_9659]]
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*** [[Tiso_gene_8950]]
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*** [[Tiso_gene_2068]]
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*** [[Tiso_gene_9243]]
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*** [[Tiso_gene_13264]]
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*** [[Tiso_gene_4330]]
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*** [[Tiso_gene_13681]]
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*** [[Tiso_gene_1610]]
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*** [[Tiso_gene_13653]]
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*** [[Tiso_gene_17449]]
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*** [[Tiso_gene_10221]]
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*** [[Tiso_gene_19098]]
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*** [[Tiso_gene_4155]]
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*** [[Tiso_gene_8164]]
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*** [[Tiso_gene_19350]]
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*** [[Tiso_gene_2631]]
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*** [[Tiso_gene_17751]]
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*** [[Tiso_gene_1611]]
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*** [[Tiso_gene_3287]]
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*** [[Tiso_gene_7734]]
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*** [[Tiso_gene_572]]
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*** [[Tiso_gene_1291]]
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*** [[Tiso_gene_14239]]
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*** [[Tiso_gene_8860]]
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** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[THYMIDYLATESYN-RXN]]
+
** 2 associated gene(s):
+
*** [[Tiso_gene_7708]]
+
*** [[Tiso_gene_18478]]
+
** 2 reconstruction source(s) associated:
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
== Reaction(s) not found ==
+
* [http://metacyc.org/META/NEW-IMAGE?object=3.5.4.30-RXN 3.5.4.30-RXN]
+
 
== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-2157}}
+
* RHEA:
{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis IV}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25229 25229]
{{#set: reaction found=6}}
+
* LIGAND-RXN:
{{#set: total reaction=7}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01759 R01759]
{{#set: completion rate=86.0}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=oxidoreductase}}
 +
{{#set: common name=aldo_keto_reductase}}
 +
{{#set: common name=aldose_reductase}}
 +
{{#set: ec number=EC-1.1.1.21}}
 +
{{#set: gene associated=Tiso_gene_8988|Tiso_gene_7799|Tiso_gene_7800|Tiso_gene_18748}}
 +
{{#set: in pathway=PWY-5515}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction RXN-8772

  • direction:
    • REVERSIBLE
  • common name:
    • oxidoreductase
    • aldo_keto_reductase
    • aldose_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5515, L-arabinose degradation II: PWY-5515
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links