Difference between revisions of "PWY-7769"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Gene == Gene Tiso_gene_15465 == * left end position: ** 827 * transcription direction: ** POSITIVE * right end position: ** 4945 * centisome position: ** 16.53338...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] ==
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== Gene Tiso_gene_15465 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 827
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
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** POSITIVE
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* right end position:
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** 4945
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* centisome position:
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** 16.533386   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ATPASE-RXN]]
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** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 all-trans-lycopene[c] '''=>''' 1 γ-carotene[c]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-11109]]
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* [[Tiso_gene_4457]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_3577]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6282]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_8263]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1547]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_11980]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[RXN-12195]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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***ec-number
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[RXN-12196]]
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* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
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** in-silico_annotation
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** '''1''' reactions found over '''6''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN0-5462]]
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* [[orthology]]:
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** in-silico_annotation
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** [[pantograph]]:
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***ec-number
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*** [[creinhardtii]]
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== Pathways associated ==
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*** [[athaliana]]
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* [[PWY-7184]]
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*** [[esiliculosus]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=827}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=4945}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
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{{#set: centisome position=16.533386    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-11109|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: ec number=EC-5.5.1.19}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: gene associated=Tiso_gene_4457|Tiso_gene_3577|Tiso_gene_6282|Tiso_gene_8263|Tiso_gene_1547|Tiso_gene_11980}}
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{{#set: in pathway=PWY-5943|PWY-7591}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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Revision as of 16:22, 10 January 2018

Gene Tiso_gene_15465

  • left end position:
    • 827
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4945
  • centisome position:
    • 16.533386
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7769&oldid=12635"