Difference between revisions of "RXN0-302"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PLASMENYLCHOLINE PLASMENYLCHOLINE] == * common name: ** a plasmenylcholine * Synonym(s): ** an...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-c-methyl-d-erythritol_-cycl...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PLASMENYLCHOLINE PLASMENYLCHOLINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** a plasmenylcholine
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** 2-c-methyl-d-erythritol_-cyclodiphosphate_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.12 EC-4.6.1.12]
 
* Synonym(s):
 
* Synonym(s):
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** an O-1-Z-alk-1-enyl-2-acyl-sn-glycero-3-phosphocholine
 
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** a choline plasmalogen
 
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** a 1-Z-alkenyl-2-acylglycerophosphocholine
 
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** a 1-Z-alkenyl-2-acyl-sn-glycero-3-phosphocholine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-17736]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 CMP[c] '''+''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_9642]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=a plasmenylcholine}}
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* RHEA:
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{{#set: common name=an O-1-Z-alk-1-enyl-2-acyl-sn-glycero-3-phosphocholine|a choline plasmalogen|a 1-Z-alkenyl-2-acylglycerophosphocholine|a 1-Z-alkenyl-2-acyl-sn-glycero-3-phosphocholine}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
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{{#set: consumed by=RXN-17736}}
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2-c-methyl-d-erythritol_-cyclodiphosphate_synthase}}
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{{#set: ec number=EC-4.6.1.12}}
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{{#set: gene associated=Tiso_gene_9642}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:35, 21 March 2018

Reaction RXN0-302

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-c-methyl-d-erythritol_-cyclodiphosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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