Difference between revisions of "DCMP-DEAMINASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] == * smiles: ** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCMP-DEAMINASE-RXN DCMP-DEAMINASE-RXN] ==
−
* smiles:
+
* direction:
−
** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O
+
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** (R)-3-hydroxyvaleryl-CoA
+
** [http://enzyme.expasy.org/EC/3.5.4.12 EC-3.5.4.12]
−
* inchi key:
+
−
** InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J
+
−
* molecular weight:
+
−
** 863.619   
+
 
* Synonym(s):
 
* Synonym(s):
−
** D-β-hydroxyvaleryl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
== Reaction(s) of unknown directionality ==
+
** 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[AMMONIUM]][c]
−
* [[RXN-12560]]
+
* With common name(s):
 +
** 1 H2O[c] '''+''' 1 H+[c] '''+''' 1 dCMP[c] '''=>''' 1 dUMP[c] '''+''' 1 ammonium[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_2978]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=54758578 54758578]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22924 22924]
−
{{#set: smiles=CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O}}
+
* LIGAND-RXN:
−
{{#set: common name=(R)-3-hydroxyvaleryl-CoA}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663]
−
{{#set: inchi key=InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J}}
+
* UNIPROT:
−
{{#set: molecular weight=863.619    }}
+
** [http://www.uniprot.org/uniprot/P32321 P32321]
−
{{#set: common name=D-β-hydroxyvaleryl-CoA}}
+
** [http://www.uniprot.org/uniprot/P00814 P00814]
−
{{#set: reversible reaction associated=RXN-12560}}
+
** [http://www.uniprot.org/uniprot/P16006 P16006]
 +
** [http://www.uniprot.org/uniprot/P06773 P06773]
 +
** [http://www.uniprot.org/uniprot/O74069 O74069]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-3.5.4.12}}
 +
{{#set: gene associated=Tiso_gene_2978}}
 +
{{#set: in pathway=PWY-7210}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:55, 21 March 2018

Reaction DCMP-DEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 H+[c] + 1 dCMP[c] => 1 dUMP[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DCMP-DEAMINASE-RXN&oldid=44685"