Difference between revisions of "RXN490-3641"

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(Created page with "Category:Gene == Gene Tiso_gene_13075 == * right end position: ** 6035 * transcription direction: ** NEGATIVE * left end position: ** 1571 * centisome position: ** 23.9847...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_13075 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
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* right end position:
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* direction:
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** 6035
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
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* left end position:
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* ec number:
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** 1571
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
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* centisome position:
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** 23.984734   
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* Synonym(s):
 
* Synonym(s):
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** prolyl hydroxylase
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** prolyl 4-hydroxylase
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** proline,2-oxoglutarate 4-dioxygenase
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** proline hydroxylase
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** protocollagen hydroxylase
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[NADH-DEHYDROG-A-RXN]]
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* With identifiers:
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** Source: [[annotation-in-silico_annotation]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c]
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*** Assignment: ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 2-oxoglutarate[c] '''+''' 1 L-proline[c] '''+''' 1 oxygen[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 trans-4-hydroxy-L-proline[c]
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* [[PWY-6692]]
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* [[PWY-3781]]
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== Genes associated with this reaction  ==
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* [[PWY-5083]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY0-1334]]
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* Gene: [[Tiso_gene_6296]]
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* [[PWY0-1335]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-4302]]
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* Gene: [[Tiso_gene_16842]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9636]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3021]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18689]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15328]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9035]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13008]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_15594]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9873]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18208]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9455]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_16122]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_2158]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17919]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17823]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18933]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9227]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18145]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_292]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_2280]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1468]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18235]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_19638]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9165]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_17593]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_8652]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
 
== External links  ==
 
== External links  ==
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{{#set: right end position=6035}}
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* LIGAND-RXN:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
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{{#set: left end position=1571}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=23.984734    }}
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{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
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{{#set: ec number=EC-1.14.11}}
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{{#set: pathway associated=PWY-6692|PWY-3781|PWY-5083|PWY0-1334|PWY0-1335|PWY-4302}}
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{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
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{{#set: gene associated=Tiso_gene_6296|Tiso_gene_16842|Tiso_gene_9636|Tiso_gene_3021|Tiso_gene_18689|Tiso_gene_15328|Tiso_gene_9035|Tiso_gene_13008|Tiso_gene_15594|Tiso_gene_9873|Tiso_gene_18208|Tiso_gene_9455|Tiso_gene_16122|Tiso_gene_2158|Tiso_gene_17919|Tiso_gene_17823|Tiso_gene_18933|Tiso_gene_9227|Tiso_gene_18145|Tiso_gene_292|Tiso_gene_2280|Tiso_gene_1468|Tiso_gene_18235|Tiso_gene_19638|Tiso_gene_9165|Tiso_gene_17593|Tiso_gene_8652}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|manual}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:08, 21 March 2018

Reaction RXN490-3641

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
  • ec number:
  • Synonym(s):
    • prolyl hydroxylase
    • prolyl 4-hydroxylase
    • proline,2-oxoglutarate 4-dioxygenase
    • proline hydroxylase
    • protocollagen hydroxylase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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