Difference between revisions of "ACETYLHOMOSER-CYS-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_10881 == * left end position: ** 3062 * transcription direction: ** POSITIVE * right end position: ** 6863 * centisome position: ** 37.2143...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** aminotransfera...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_10881 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
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* left end position:
+
* direction:
−
** 3062
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** REVERSIBLE
−
* transcription direction:
+
* common name:
−
** POSITIVE
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** aminotransferase
−
* right end position:
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** aspartate_aminotransferase
−
** 6863
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
−
** 37.21439   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
−
* [[CYSTEINE--TRNA-LIGASE-RXN]]
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* With identifiers:
−
** in-silico_annotation
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[GLT]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
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** 1 2-oxoglutarate[c] '''+''' 1 L-aspartate[c] '''<=>''' 1 oxaloacetate[c] '''+''' 1 L-glutamate[c]
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***ec-number
+
 
−
== Pathways associated ==
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== Genes associated with this reaction  ==
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* [[TRNA-CHARGING-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_17809]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_15680]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_12889]]
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** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_6815]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_13538]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17718]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 +
*** [[athaliana]]
 +
*** [[esiliculosus]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3062}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
−
{{#set: right end position=6863}}
+
* LIGAND-RXN:
−
{{#set: centisome position=37.21439    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
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{{#set: reaction associated=CYSTEINE--TRNA-LIGASE-RXN}}
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* UNIPROT:
−
{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
 +
** [http://www.uniprot.org/uniprot/P08906 P08906]
 +
** [http://www.uniprot.org/uniprot/P12343 P12343]
 +
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
 +
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
 +
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
 +
** [http://www.uniprot.org/uniprot/O28151 O28151]
 +
** [http://www.uniprot.org/uniprot/O67781 O67781]
 +
** [http://www.uniprot.org/uniprot/P08907 P08907]
 +
** [http://www.uniprot.org/uniprot/P12345 P12345]
 +
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
 +
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
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** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
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** [http://www.uniprot.org/uniprot/P53001 P53001]
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** [http://www.uniprot.org/uniprot/P96847 P96847]
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** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
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** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
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** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
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** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
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** [http://www.uniprot.org/uniprot/O66737 O66737]
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** [http://www.uniprot.org/uniprot/O28650 O28650]
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** [http://www.uniprot.org/uniprot/O30304 O30304]
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** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
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** [http://www.uniprot.org/uniprot/O27916 O27916]
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** [http://www.uniprot.org/uniprot/O05237 O05237]
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** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
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** [http://www.uniprot.org/uniprot/O25383 O25383]
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** [http://www.uniprot.org/uniprot/O27638 O27638]
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** [http://www.uniprot.org/uniprot/O96142 O96142]
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** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
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** [http://www.uniprot.org/uniprot/P00507 P00507]
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** [http://www.uniprot.org/uniprot/P44425 P44425]
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** [http://www.uniprot.org/uniprot/Q59569 Q59569]
 +
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
 +
** [http://www.uniprot.org/uniprot/P37833 P37833]
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** [http://www.uniprot.org/uniprot/O48599 O48599]
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** [http://www.uniprot.org/uniprot/O33822 O33822]
 +
** [http://www.uniprot.org/uniprot/P05201 P05201]
 +
** [http://www.uniprot.org/uniprot/P05202 P05202]
 +
** [http://www.uniprot.org/uniprot/P14909 P14909]
 +
** [http://www.uniprot.org/uniprot/P17174 P17174]
 +
** [http://www.uniprot.org/uniprot/P33097 P33097]
 +
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
 +
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
 +
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
 +
** [http://www.uniprot.org/uniprot/P12344 P12344]
 +
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
 +
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
 +
** [http://www.uniprot.org/uniprot/P36692 P36692]
 +
** [http://www.uniprot.org/uniprot/P28011 P28011]
 +
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
 +
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
 +
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
 +
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
 +
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
 +
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
 +
** [http://www.uniprot.org/uniprot/P72859 P72859]
 +
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
 +
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
 +
** [http://www.uniprot.org/uniprot/O48598 O48598]
 +
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
 +
** [http://www.uniprot.org/uniprot/P46248 P46248]
 +
** [http://www.uniprot.org/uniprot/O48548 O48548]
 +
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
 +
** [http://www.uniprot.org/uniprot/P28734 P28734]
 +
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
 +
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
 +
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
 +
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
 +
** [http://www.uniprot.org/uniprot/O01804 O01804]
 +
** [http://www.uniprot.org/uniprot/O54170 O54170]
 +
** [http://www.uniprot.org/uniprot/O42652 O42652]
 +
** [http://www.uniprot.org/uniprot/O94320 O94320]
 +
** [http://www.uniprot.org/uniprot/P46644 P46644]
 +
** [http://www.uniprot.org/uniprot/P00504 P00504]
 +
** [http://www.uniprot.org/uniprot/P00508 P00508]
 +
** [http://www.uniprot.org/uniprot/P00509 P00509]
 +
** [http://www.uniprot.org/uniprot/P00505 P00505]
 +
** [http://www.uniprot.org/uniprot/P00503 P00503]
 +
** [http://www.uniprot.org/uniprot/P00506 P00506]
 +
** [http://www.uniprot.org/uniprot/P26563 P26563]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=aminotransferase}}
 +
{{#set: common name=aspartate_aminotransferase}}
 +
{{#set: ec number=EC-2.6.1.1}}
 +
{{#set: gene associated=Tiso_gene_17809|Tiso_gene_15680|Tiso_gene_12889|Tiso_gene_6815|Tiso_gene_13538|Tiso_gene_17718}}
 +
{{#set: in pathway=PWY-5913|MALATE-ASPARTATE-SHUTTLE-PWY|PWY-7383|ASPARTATESYN-PWY|ASPARTATE-DEG1-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|ASPARAGINE-DEG1-PWY-1}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:42, 10 January 2018

Reaction ASPAMINOTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • aminotransferase
    • aspartate_aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links








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