Difference between revisions of "Tiso gene 10659"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7665 RXN-7665] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_re...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_prot...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7665 RXN-7665] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** geranylgeranyl_diphosphate_reductase
+
** 5_deoxy_cytosolic_type_c_protein
 +
** 5_-nucleotidase
 +
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[CPD-7004]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-7006]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[GMP]][c] '''=>''' 1 [[GUANOSINE]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 dihydrogeranylgeranyl chlorophyll a[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 tetrahydrogeranylgeranyl chlorophyll a[c]
+
** 1 H2O[c] '''+''' 1 GMP[c] '''=>''' 1 guanosine[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2613]]
+
* [[Tiso_gene_5911]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_6640]]
−
***AUTOMATED-NAME-MATCH
+
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9166]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_14246]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14434]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14435]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6988]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_13929]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
+
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27714 27714]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=geranylgeranyl_diphosphate_reductase}}
+
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
−
{{#set: gene associated=Tiso_gene_2613}}
+
{{#set: common name=5_-nucleotidase}}
−
{{#set: in pathway=PWY-5064}}
+
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-3.1.3.5}}
 +
{{#set: gene associated=Tiso_gene_5911|Tiso_gene_6640|Tiso_gene_9166|Tiso_gene_14246|Tiso_gene_14434|Tiso_gene_14435|Tiso_gene_6988|Tiso_gene_13929}}
 +
{{#set: in pathway=PWY-6608|PWY-6607|PWY-6606}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:10, 10 January 2018

Reaction RXN-7609

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_deoxy_cytosolic_type_c_protein
    • 5_-nucleotidase
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 GMP[c] => 1 guanosine[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6607, guanosine nucleotides degradation I: PWY-6607
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links








Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10659&oldid=16470"