Difference between revisions of "Tiso gene 1154"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17917 RXN-17917] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligase ** dna_ligase_mr...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** endo-_-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17917 RXN-17917] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dna_ligase
+
** endo-_-beta-glucanase
−
** dna_ligase_mrna_capping_enzyme
+
** nicotinate-nucleotide_pyrophosphorylase
−
** ORF
+
** phosphoglycolate_phosphatase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.4.2.19 EC-2.4.2.19]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DNA-Ligase-L-lysine]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[DNA-Ligase-L-lysine-adenylate]][c]
+
** 1 [[QUINOLINATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [DNA ligase]-L-lysine[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 a [DNA ligase]-N6-(5'-adenylyl)-L-lysine[c]
+
** 1 quinolinate[c] '''+''' 2 H+[c] '''+''' 1 5-phospho-α-D-ribose 1-diphosphate[c] '''=>''' 1 CO2[c] '''+''' 1 diphosphate[c] '''+''' 1 β-nicotinate D-ribonucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6743]]
+
* [[Tiso_gene_141]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_14250]]
+
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_12892]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_11251]]
+
* [[Tiso_gene_8723]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_12142]]
+
* [[Tiso_gene_140]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_14249]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3498]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5653 PWY-5653]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PYRIDNUCSYN-PWY]], NAD biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 +
*** [[athaliana]]
 +
*** [[esiliculosus]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12733 12733]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8]
 +
** [http://www.uniprot.org/uniprot/Q57916 Q57916]
 +
** [http://www.uniprot.org/uniprot/P30011 P30011]
 +
** [http://www.uniprot.org/uniprot/P46714 P46714]
 +
** [http://www.uniprot.org/uniprot/Q15274 Q15274]
 +
** [http://www.uniprot.org/uniprot/P77938 P77938]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dna_ligase}}
+
{{#set: common name=endo-_-beta-glucanase}}
−
{{#set: common name=dna_ligase_mrna_capping_enzyme}}
+
{{#set: common name=nicotinate-nucleotide_pyrophosphorylase}}
−
{{#set: common name=ORF}}
+
{{#set: common name=phosphoglycolate_phosphatase}}
−
{{#set: gene associated=Tiso_gene_6743|Tiso_gene_14250|Tiso_gene_11251|Tiso_gene_12142|Tiso_gene_14249|Tiso_gene_3498}}
+
{{#set: ec number=EC-2.4.2.19}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_141|Tiso_gene_12892|Tiso_gene_8723|Tiso_gene_140}}
 +
{{#set: in pathway=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=in-silico_annotation}}
 
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:22, 10 January 2018

Reaction QUINOPRIBOTRANS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • endo-_-beta-glucanase
    • nicotinate-nucleotide_pyrophosphorylase
    • phosphoglycolate_phosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5316, nicotine biosynthesis: PWY-5316
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: PWY-5653
    • 3 reactions found over 4 reactions in the full pathway
  • PYRIDNUCSYN-PWY, NAD biosynthesis I (from aspartate): PYRIDNUCSYN-PWY
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7342, superpathway of nicotine biosynthesis: PWY-7342
    • 3 reactions found over 13 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1154&oldid=17466"