Difference between revisions of "TRANS-RXN-77"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=METHYLENE-THF-GLU-N METHYLENE-THF-GLU-N] == * common name: ** a 5,10-methylene-tetrahydrofolate...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Pathway]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=METHYLENE-THF-GLU-N METHYLENE-THF-GLU-N] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] ==
 +
* taxonomic range:
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
−
** a 5,10-methylene-tetrahydrofolate
+
** TCA cycle IV (2-oxoglutarate decarboxylase)
 
* Synonym(s):
 
* Synonym(s):
−
** methylene-H4PteGlu(n)
+
** citric acid cycle
−
** methylene-THF(glu)n
+
** tricarboxylic acid cycle
−
** methylene-H4PteGlun
+
** Szent-Gyorgyi-Krebs cycle
−
** methylene-tetrahydropteroylpolyglutamates
+
** Krebs cycle
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction(s) found ==
−
* [[1.5.1.20-RXN]]
+
'''9''' reactions found over '''11''' reactions in the full pathway
−
* [[RXN-5061]]
+
* [[ACONITATEDEHYDR-RXN]]
−
* [[RXN0-2921]]
+
** 1 associated gene(s):
−
* [[THYMIDYLATESYN-RXN]]
+
*** [[Tiso_gene_13007]]
−
== Reaction(s) known to produce the compound ==
+
** 3 reconstruction source(s) associated:
−
* [[RXN-2881]]
+
*** [[annotation-experimental_annotation]]
−
* [[RXN0-2921]]
+
*** [[annotation-in-silico_annotation]]
−
== Reaction(s) of unknown directionality ==
+
*** [[orthology-synechocystis]]
−
* [[GCVT-RXN]]
+
* [[ACONITATEHYDR-RXN]]
−
* [[GLYOHMETRANS-RXN]]
+
** 1 associated gene(s):
−
* [[3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN]]
+
*** [[Tiso_gene_13007]]
−
* [[METHYLENETHFDEHYDROG-NADP-RXN]]
+
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[CITSYN-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_18030]]
 +
*** [[Tiso_gene_9601]]
 +
*** [[Tiso_gene_9603]]
 +
*** [[Tiso_gene_9602]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[FUMHYDR-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_6720]]
 +
*** [[Tiso_gene_3691]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[ISOCIT-CLEAV-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_14008]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[ISOCITDEH-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_18262]]
 +
*** [[Tiso_gene_10809]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[MALATE-DEH-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_1990]]
 +
*** [[Tiso_gene_2323]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[MALSYN-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_14377]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[SUCCSEMIALDDEHYDROG-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_6952]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-synechocystis]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7774 RXN-7774]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=a 5,10-methylene-tetrahydrofolate}}
+
{{#set: taxonomic range=TAX-1117}}
−
{{#set: common name=methylene-H4PteGlu(n)|methylene-THF(glu)n|methylene-H4PteGlun|methylene-tetrahydropteroylpolyglutamates}}
+
{{#set: taxonomic range=TAX-3035}}
−
{{#set: consumed by=1.5.1.20-RXN|RXN-5061|RXN0-2921|THYMIDYLATESYN-RXN}}
+
{{#set: taxonomic range=TAX-1224}}
−
{{#set: produced by=RXN-2881|RXN0-2921}}
+
{{#set: taxonomic range=TAX-201174}}
−
{{#set: consumed or produced by=GCVT-RXN|GLYOHMETRANS-RXN|3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN|METHYLENETHFDEHYDROG-NADP-RXN}}
+
{{#set: common name=TCA cycle IV (2-oxoglutarate decarboxylase)}}
 +
{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
 +
{{#set: reaction found=9}}
 +
{{#set: total reaction=11}}
 +
{{#set: completion rate=82.0}}

Revision as of 17:55, 18 March 2018

Pathway P105-PWY

  • taxonomic range:
  • common name:
    • TCA cycle IV (2-oxoglutarate decarboxylase)
  • Synonym(s):
    • citric acid cycle
    • tricarboxylic acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

9 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRANS-RXN-77&oldid=20701"