Difference between revisions of "RXN-1884"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11400 CPD-11400] == * smiles: ** C(=O)([O-])C([N+])CC1(=CC(I)=C(C(I)=C1)OC3(C=CC(OC2(OC(C(=...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11400 CPD-11400] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** C(=O)([O-])C([N+])CC1(=CC(I)=C(C(I)=C1)OC3(C=CC(OC2(OC(C(=O)[O-])C(O)C(O)C(O)2))=C(I)C=3))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=YYFGGGCINNGOLE-ZDXOGFQLSA-M
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* common name:
 
* common name:
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** 3,5,3'-triiodo-L-thyronine phenolic β-D-glucuronide
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** histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
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* molecular weight:
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** ORF
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** 826.095   
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** atp-dependent_rna_helicase_dhx30-like
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.21 EC-6.1.1.21]
 
* Synonym(s):
 
* Synonym(s):
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** triiodothyronine glucuronide
 
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** beta-D-glucopyranosiduronic acid, 4-(4-(2-amino-2-carboxyethyl)-2,6-diiodophenoxy)-2-iodophenyl, (S)-
 
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** T3G
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-10607]]
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** 1 [[HIS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HIS]][c] '''=>''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a tRNAhis[c] '''+''' 1 ATP[c] '''+''' 1 L-histidine[c] '''=>''' 1 an L-histidyl-[tRNAhis][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8798]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13414]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12634]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
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*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
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*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659063 90659063]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17313 17313]
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{{#set: smiles=C(=O)([O-])C([N+])CC1(=CC(I)=C(C(I)=C1)OC3(C=CC(OC2(OC(C(=O)[O-])C(O)C(O)C(O)2))=C(I)C=3))}}
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* LIGAND-RXN:
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{{#set: inchi key=InChIKey=YYFGGGCINNGOLE-ZDXOGFQLSA-M}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
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{{#set: common name=3,5,3'-triiodo-L-thyronine phenolic β-D-glucuronide}}
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* UNIPROT:
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{{#set: molecular weight=826.095    }}
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** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
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{{#set: common name=triiodothyronine glucuronide|beta-D-glucopyranosiduronic acid, 4-(4-(2-amino-2-carboxyethyl)-2,6-diiodophenoxy)-2-iodophenyl, (S)-|T3G}}
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** [http://www.uniprot.org/uniprot/O58028 O58028]
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{{#set: produced by=RXN-10607}}
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** [http://www.uniprot.org/uniprot/O67223 O67223]
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** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
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** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
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** [http://www.uniprot.org/uniprot/P56455 P56455]
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** [http://www.uniprot.org/uniprot/Q58406 Q58406]
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** [http://www.uniprot.org/uniprot/O32039 O32039]
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** [http://www.uniprot.org/uniprot/O51160 O51160]
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** [http://www.uniprot.org/uniprot/O66522 O66522]
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** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
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** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
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** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
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** [http://www.uniprot.org/uniprot/P47281 P47281]
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** [http://www.uniprot.org/uniprot/O34459 O34459]
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** [http://www.uniprot.org/uniprot/O83647 O83647]
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** [http://www.uniprot.org/uniprot/O84547 O84547]
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** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
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** [http://www.uniprot.org/uniprot/P43823 P43823]
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** [http://www.uniprot.org/uniprot/Q61035 Q61035]
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** [http://www.uniprot.org/uniprot/P30053 P30053]
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** [http://www.uniprot.org/uniprot/P46696 P46696]
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** [http://www.uniprot.org/uniprot/P51348 P51348]
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** [http://www.uniprot.org/uniprot/P75069 P75069]
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** [http://www.uniprot.org/uniprot/Q55653 Q55653]
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** [http://www.uniprot.org/uniprot/Q49027 Q49027]
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** [http://www.uniprot.org/uniprot/P07263 P07263]
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** [http://www.uniprot.org/uniprot/P60906 P60906]
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** [http://www.uniprot.org/uniprot/P12081 P12081]
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** [http://www.uniprot.org/uniprot/P93422 P93422]
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** [http://www.uniprot.org/uniprot/O82413 O82413]
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{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)}}
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{{#set: common name=ORF}}
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{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
 +
{{#set: ec number=EC-6.1.1.21}}
 +
{{#set: gene associated=Tiso_gene_8798|Tiso_gene_13414|Tiso_gene_12634}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:42, 10 January 2018

Reaction HISTIDINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
    • ORF
    • atp-dependent_rna_helicase_dhx30-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAhis[c] + 1 ATP[c] + 1 L-histidine[c] => 1 an L-histidyl-[tRNAhis][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1884&oldid=10072"