Difference between revisions of "CPD-8123"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.14-RXN 3.2.1.14-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glycoside_hydrolase_f...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate_de...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.14-RXN 3.2.1.14-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** glycoside_hydrolase_family_18_protein
+
** isopentenyl-diphosphate_delta-isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.14 EC-3.2.1.14]
+
** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CHITIN]][c] '''=>''' 2 [[Chitodextrins]][c]
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 chitin[c] '''=>''' 2 a chitodextrin[c]
+
** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10265]]
+
* [[Tiso_gene_8653]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7822]], chitin degradation III (Serratia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7822 PWY-7822]
+
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
+
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6855]], chitin degradation I (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6855 PWY-6855]
+
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[manual]]:
 +
** [[primary_network]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07254 P07254]
+
** [http://www.uniprot.org/uniprot/P15496 P15496]
−
** [http://www.uniprot.org/uniprot/P23951 P23951]
+
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
−
** [http://www.uniprot.org/uniprot/P17541 P17541]
+
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
−
** [http://www.uniprot.org/uniprot/P29030 P29030]
+
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
−
** [http://www.uniprot.org/uniprot/P20533 P20533]
+
** [http://www.uniprot.org/uniprot/P93355 P93355]
−
** [http://www.uniprot.org/uniprot/P29029 P29029]
+
** [http://www.uniprot.org/uniprot/O81691 O81691]
−
** [http://www.uniprot.org/uniprot/P27050 P27050]
+
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
−
** [http://www.uniprot.org/uniprot/P11218 P11218]
+
** [http://www.uniprot.org/uniprot/O81660 O81660]
−
** [http://www.uniprot.org/uniprot/P29115 P29115]
+
** [http://www.uniprot.org/uniprot/O81659 O81659]
−
** [http://www.uniprot.org/uniprot/Q54501 Q54501]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P19172 P19172]
+
{{#set: common name=isopentenyl-diphosphate_delta-isomerase}}
−
** [http://www.uniprot.org/uniprot/P29026 P29026]
+
{{#set: ec number=EC-5.3.3.2}}
−
** [http://www.uniprot.org/uniprot/Q23737 Q23737]
+
{{#set: gene associated=Tiso_gene_8653}}
−
** [http://www.uniprot.org/uniprot/P36362 P36362]
+
{{#set: in pathway=PWY-6174|PWY-7560|PWY-6859|NONMEVIPP-PWY|PWY-6383|PWY-7391|PWY-5123|PWY-922|PWY-7102|PWY-7524}}
−
** [http://www.uniprot.org/uniprot/P19171 P19171]
+
{{#set: reconstruction category=manual}}
−
** [http://www.uniprot.org/uniprot/P29027 P29027]
+
{{#set: reconstruction source=primary_network}}
−
** [http://www.uniprot.org/uniprot/P29116 P29116]
+
−
** [http://www.uniprot.org/uniprot/Q9R5K8 Q9R5K8]
+
−
** [http://www.uniprot.org/uniprot/Q7M233 Q7M233]
+
−
** [http://www.uniprot.org/uniprot/Q9R5K7 Q9R5K7]
+
−
** [http://www.uniprot.org/uniprot/Q9CE95 Q9CE95]
+
−
** [http://www.uniprot.org/uniprot/Q59145 Q59145]
+
−
** [http://www.uniprot.org/uniprot/Q9FRV1 Q9FRV1]
+
−
** [http://www.uniprot.org/uniprot/Q56077 Q56077]
+
−
** [http://www.uniprot.org/uniprot/Q40667 Q40667]
+
−
** [http://www.uniprot.org/uniprot/Q40668 Q40668]
+
−
** [http://www.uniprot.org/uniprot/Q9S9F7 Q9S9F7]
+
−
** [http://www.uniprot.org/uniprot/P54196 P54196]
+
−
** [http://www.uniprot.org/uniprot/O49824 O49824]
+
−
** [http://www.uniprot.org/uniprot/O49825 O49825]
+
−
** [http://www.uniprot.org/uniprot/O49826 O49826]
+
−
** [http://www.uniprot.org/uniprot/O49827 O49827]
+
−
** [http://www.uniprot.org/uniprot/Q7GCM7 Q7GCM7]
+
−
** [http://www.uniprot.org/uniprot/O22080 O22080]
+
−
** [http://www.uniprot.org/uniprot/O49830 O49830]
+
−
** [http://www.uniprot.org/uniprot/Q9SXY2 Q9SXY2]
+
−
** [http://www.uniprot.org/uniprot/O60994 O60994]
+
−
** [http://www.uniprot.org/uniprot/Q9RHU3 Q9RHU3]
+
−
** [http://www.uniprot.org/uniprot/Q9SLP4 Q9SLP4]
+
−
** [http://www.uniprot.org/uniprot/Q9RHU5 Q9RHU5]
+
−
** [http://www.uniprot.org/uniprot/Q9RHU4 Q9RHU4]
+
−
** [http://www.uniprot.org/uniprot/Q7M1Q9 Q7M1Q9]
+
−
** [http://www.uniprot.org/uniprot/Q7M443 Q7M443]
+
−
** [http://www.uniprot.org/uniprot/Q9S7G9 Q9S7G9]
+
−
** [http://www.uniprot.org/uniprot/P11220 P11220]
+
−
** [http://www.uniprot.org/uniprot/Q59924 Q59924]
+
−
** [http://www.uniprot.org/uniprot/Q9FRV0 Q9FRV0]
+
−
** [http://www.uniprot.org/uniprot/P36361 P36361]
+
−
** [http://www.uniprot.org/uniprot/P32470 P32470]
+
−
** [http://www.uniprot.org/uniprot/Q92223 Q92223]
+
−
** [http://www.uniprot.org/uniprot/Q7M1R1 Q7M1R1]
+
−
** [http://www.uniprot.org/uniprot/P14529 P14529]
+
−
** [http://www.uniprot.org/uniprot/Q9S8X7 Q9S8X7]
+
−
** [http://www.uniprot.org/uniprot/P11955 P11955]
+
−
** [http://www.uniprot.org/uniprot/P11797 P11797]
+
−
** [http://www.uniprot.org/uniprot/P05315 P05315]
+
−
** [http://www.uniprot.org/uniprot/P08252 P08252]
+
−
** [http://www.uniprot.org/uniprot/P24626 P24626]
+
−
** [http://www.uniprot.org/uniprot/P25765 P25765]
+
−
** [http://www.uniprot.org/uniprot/P27054 P27054]
+
−
** [http://www.uniprot.org/uniprot/P17513 P17513]
+
−
** [http://www.uniprot.org/uniprot/P17514 P17514]
+
−
** [http://www.uniprot.org/uniprot/P29021 P29021]
+
−
** [http://www.uniprot.org/uniprot/P24091 P24091]
+
−
** [http://www.uniprot.org/uniprot/P29059 P29059]
+
−
** [http://www.uniprot.org/uniprot/P29060 P29060]
+
−
** [http://www.uniprot.org/uniprot/P29061 P29061]
+
−
** [http://www.uniprot.org/uniprot/Q06209 Q06209]
+
−
** [http://www.uniprot.org/uniprot/Q43184 Q43184]
+
−
** [http://www.uniprot.org/uniprot/P36908 P36908]
+
−
** [http://www.uniprot.org/uniprot/Q05638 Q05638]
+
−
** [http://www.uniprot.org/uniprot/P29025 P29025]
+
−
** [http://www.uniprot.org/uniprot/P29024 P29024]
+
−
** [http://www.uniprot.org/uniprot/Q05537 Q05537]
+
−
** [http://www.uniprot.org/uniprot/Q05540 Q05540]
+
−
** [http://www.uniprot.org/uniprot/Q05539 Q05539]
+
−
** [http://www.uniprot.org/uniprot/Q05538 Q05538]
+
−
** [http://www.uniprot.org/uniprot/Q41539 Q41539]
+
−
** [http://www.uniprot.org/uniprot/Q43294 Q43294]
+
−
** [http://www.uniprot.org/uniprot/P52405 P52405]
+
−
** [http://www.uniprot.org/uniprot/P42820 P42820]
+
−
** [http://www.uniprot.org/uniprot/Q12735 Q12735]
+
−
** [http://www.uniprot.org/uniprot/Q43764 Q43764]
+
−
** [http://www.uniprot.org/uniprot/Q43765 Q43765]
+
−
** [http://www.uniprot.org/uniprot/Q40114 Q40114]
+
−
** [http://www.uniprot.org/uniprot/Q43591 Q43591]
+
−
** [http://www.uniprot.org/uniprot/Q43151 Q43151]
+
−
** [http://www.uniprot.org/uniprot/Q43150 Q43150]
+
−
** [http://www.uniprot.org/uniprot/Q42421 Q42421]
+
−
** [http://www.uniprot.org/uniprot/Q54276 Q54276]
+
−
** [http://www.uniprot.org/uniprot/Q42995 Q42995]
+
−
** [http://www.uniprot.org/uniprot/P21226 P21226]
+
−
** [http://www.uniprot.org/uniprot/Q43683 Q43683]
+
−
** [http://www.uniprot.org/uniprot/Q43684 Q43684]
+
−
** [http://www.uniprot.org/uniprot/Q12631 Q12631]
+
−
** [http://www.uniprot.org/uniprot/P36907 P36907]
+
−
** [http://www.uniprot.org/uniprot/Q09023 Q09023]
+
−
** [http://www.uniprot.org/uniprot/Q12713 Q12713]
+
−
** [http://www.uniprot.org/uniprot/P52403 P52403]
+
−
** [http://www.uniprot.org/uniprot/P52404 P52404]
+
−
** [http://www.uniprot.org/uniprot/P52406 P52406]
+
−
** [http://www.uniprot.org/uniprot/Q43322 Q43322]
+
−
** [http://www.uniprot.org/uniprot/Q42515 Q42515]
+
−
** [http://www.uniprot.org/uniprot/Q59141 Q59141]
+
−
** [http://www.uniprot.org/uniprot/Q59142 Q59142]
+
−
** [http://www.uniprot.org/uniprot/Q59143 Q59143]
+
−
** [http://www.uniprot.org/uniprot/Q59144 Q59144]
+
−
** [http://www.uniprot.org/uniprot/Q42878 Q42878]
+
−
** [http://www.uniprot.org/uniprot/P93154 P93154]
+
−
** [http://www.uniprot.org/uniprot/O50076 O50076]
+
−
** [http://www.uniprot.org/uniprot/Q9ZSI6 Q9ZSI6]
+
−
** [http://www.uniprot.org/uniprot/P93518 P93518]
+
−
** [http://www.uniprot.org/uniprot/O24007 O24007]
+
−
** [http://www.uniprot.org/uniprot/Q41794 Q41794]
+
−
** [http://www.uniprot.org/uniprot/Q41795 Q41795]
+
−
** [http://www.uniprot.org/uniprot/Q42970 Q42970]
+
−
** [http://www.uniprot.org/uniprot/O04138 O04138]
+
−
** [http://www.uniprot.org/uniprot/O04272 O04272]
+
−
** [http://www.uniprot.org/uniprot/Q42993 Q42993]
+
−
** [http://www.uniprot.org/uniprot/Q42839 Q42839]
+
−
** [http://www.uniprot.org/uniprot/O48642 O48642]
+
−
** [http://www.uniprot.org/uniprot/Q43852 Q43852]
+
−
** [http://www.uniprot.org/uniprot/O81144 O81144]
+
−
** [http://www.uniprot.org/uniprot/O81145 O81145]
+
−
** [http://www.uniprot.org/uniprot/O65213 O65213]
+
−
** [http://www.uniprot.org/uniprot/Q40838 Q40838]
+
−
** [http://www.uniprot.org/uniprot/P94084 P94084]
+
−
** [http://www.uniprot.org/uniprot/Q43752 Q43752]
+
−
** [http://www.uniprot.org/uniprot/Q39656 Q39656]
+
−
** [http://www.uniprot.org/uniprot/Q39657 Q39657]
+
−
** [http://www.uniprot.org/uniprot/P23472 P23472]
+
−
** [http://www.uniprot.org/uniprot/Q39799 Q39799]
+
−
** [http://www.uniprot.org/uniprot/Q39785 Q39785]
+
−
** [http://www.uniprot.org/uniprot/O17412 O17412]
+
−
** [http://www.uniprot.org/uniprot/O04222 O04222]
+
−
** [http://www.uniprot.org/uniprot/Q96408 Q96408]
+
−
** [http://www.uniprot.org/uniprot/Q96409 Q96409]
+
−
** [http://www.uniprot.org/uniprot/Q96410 Q96410]
+
−
** [http://www.uniprot.org/uniprot/Q96411 Q96411]
+
−
** [http://www.uniprot.org/uniprot/Q84577 Q84577]
+
−
** [http://www.uniprot.org/uniprot/P92013 P92013]
+
−
** [http://www.uniprot.org/uniprot/P96156 P96156]
+
−
** [http://www.uniprot.org/uniprot/P75020 P75020]
+
−
** [http://www.uniprot.org/uniprot/Q9YMQ7 Q9YMQ7]
+
−
** [http://www.uniprot.org/uniprot/Q9ZIX4 Q9ZIX4]
+
−
** [http://www.uniprot.org/uniprot/Q11174 Q11174]
+
−
** [http://www.uniprot.org/uniprot/O44079 O44079]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glycoside_hydrolase_family_18_protein}}
+
−
{{#set: ec number=EC-3.2.1.14}}
+
−
{{#set: gene associated=Tiso_gene_10265}}
+
−
{{#set: in pathway=PWY-7822|PWY-6902|PWY-6855}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=in-silico_annotation}}
 
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 16:01, 10 January 2018

Reaction IPPISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isopentenyl-diphosphate_delta-isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] <=> 1 dimethylallyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-8123&oldid=11287"