Difference between revisions of "SO3"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.170-RXN 1.1.1.170-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.or...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan transpeptidas...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.170-RXN 1.1.1.170-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** peptidoglycan transpeptidase (Gram-negative bacteria)
 +
** beta-lactamase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.170 EC-1.1.1.170]
+
** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[CPD-5846]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[4-ALPHA-METHYL-5-ALPHA-CHOLEST-7-EN-3-ON]][c]
+
** 1 [[CPD-17927]][c] '''+''' 1 [[CPD-17931]][c] '''=>''' 1 [[CPD-17932]][c] '''+''' 1 [[D-ALANINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD(P)+[c] '''+''' 1 3&beta;-hydroxy-4&beta;-methyl-5&alpha;-cholest-7-ene-4&alpha;-carboxylate[c] '''<=>''' 1 CO2[c] '''+''' 1 NAD(P)H[c] '''+''' 1 4&alpha;-methyl-5&alpha;-cholest-7-en-3-one[c]
+
** 1 a nascent peptidoglycan with (L-alanyl-&gamma;-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 a peptidoglycan with (L-alanyl-&gamma;-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''=>''' 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c] '''+''' 1 D-alanine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_897]]
+
* [[Tiso_gene_18870]]
−
** [[pantograph]]-[[esiliculosus]]
+
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
 +
** '''2''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* [[annotation]]:
−
** [[pantograph]]:
+
** [[pathwaytools]]:
−
*** [[esiliculosus]]
+
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20676 20676]
+
{{#set: common name=peptidoglycan transpeptidase (Gram-negative bacteria)}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20672 20672]
+
{{#set: common name=beta-lactamase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-3.4.16.4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07149 R07149]
+
{{#set: gene associated=Tiso_gene_18870}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=PWY0-1586}}
−
{{#set: ec number=EC-1.1.1.170}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: gene associated=Tiso_gene_897}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction source=in-silico_annotation}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+

Revision as of 16:14, 10 January 2018

Reaction RXN-16659

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidoglycan transpeptidase (Gram-negative bacteria)
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] + 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] => 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c] + 1 D-alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1586, peptidoglycan maturation (meso-diaminopimelate containing): PWY0-1586
    • 2 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SO3&oldid=12037"