Difference between revisions of "Tiso gene 6599"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE] == * smiles: *...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** CC(C)C(C([O-])=O)C(C([O-])=O)O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=RNQHMTFBUSSBJQ-CRCLSJGQSA-L
+
 
* common name:
 
* common name:
−
** (2R,3S)-3-isopropylmalate
+
** aspartyl-trna_synthetase
−
* molecular weight:
+
* ec number:
−
** 174.153   
+
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
 
* Synonym(s):
 
* Synonym(s):
−
** 2-D-threo-hydroxy-3-carboxy-isocaproate
 
−
** 3-carboxy-2-hydroxy-4-methylpentanoate
 
−
** β-isopropylmalate
 
−
** 3-isopropylmalate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-13158]]
+
* With identifiers:
−
* [[IMDH]]
+
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ASP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
−
== Reaction(s) known to produce the compound ==
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 L-aspartate[c] '''+''' 1 ATP[c] '''+''' 1 tRNAasp[c] '''=>''' 1 AMP[c] '''+''' 1 an L-aspartyl-[tRNAasp][c] '''+''' 1 diphosphate[c]
−
* [[RXN-8991]]
+
 
−
* [[RXN-13163]]
+
== Genes associated with this reaction  ==
−
* [[3-ISOPROPYLMALDEHYDROG-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_17185]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7126]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13081]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6857402 6857402]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
−
* HMDB : HMDB12156
+
* LIGAND-RXN:
−
* LIGAND-CPD:
+
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
−
** [http://www.genome.jp/dbget-bin/www_bget?C04411 C04411]
+
* UNIPROT:
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
−
** [http://www.chemspider.com/Chemical-Structure.5256741.html 5256741]
+
** [http://www.uniprot.org/uniprot/O26328 O26328]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/O83950 O83950]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=35121 35121]
+
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
−
* BIGG : 3c2hmp
+
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
−
{{#set: smiles=CC(C)C(C([O-])=O)C(C([O-])=O)O}}
+
** [http://www.uniprot.org/uniprot/O32038 O32038]
−
{{#set: inchi key=InChIKey=RNQHMTFBUSSBJQ-CRCLSJGQSA-L}}
+
** [http://www.uniprot.org/uniprot/O67589 O67589]
−
{{#set: common name=(2R,3S)-3-isopropylmalate}}
+
** [http://www.uniprot.org/uniprot/P43817 P43817]
−
{{#set: molecular weight=174.153    }}
+
** [http://www.uniprot.org/uniprot/O51402 O51402]
−
{{#set: common name=2-D-threo-hydroxy-3-carboxy-isocaproate|3-carboxy-2-hydroxy-4-methylpentanoate|β-isopropylmalate|3-isopropylmalate}}
+
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
−
{{#set: consumed by=RXN-13158|IMDH}}
+
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
−
{{#set: consumed or produced by=RXN-8991|RXN-13163|3-ISOPROPYLMALDEHYDROG-RXN}}
+
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 +
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 +
** [http://www.uniprot.org/uniprot/O58776 O58776]
 +
** [http://www.uniprot.org/uniprot/O84546 O84546]
 +
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 +
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 +
** [http://www.uniprot.org/uniprot/P47282 P47282]
 +
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 +
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 +
** [http://www.uniprot.org/uniprot/P36429 P36429]
 +
** [http://www.uniprot.org/uniprot/P75068 P75068]
 +
** [http://www.uniprot.org/uniprot/P73851 P73851]
 +
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 +
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 +
** [http://www.uniprot.org/uniprot/P04802 P04802]
 +
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=aspartyl-trna_synthetase}}
 +
{{#set: ec number=EC-6.1.1.12}}
 +
{{#set: gene associated=Tiso_gene_17185|Tiso_gene_7126|Tiso_gene_13081}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:27, 10 January 2018

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aspartyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-aspartate[c] + 1 ATP[c] + 1 tRNAasp[c] => 1 AMP[c] + 1 an L-aspartyl-[tRNAasp][c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6599&oldid=13062"