Difference between revisions of "Tiso gene 20163"

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(Created page with "Category:Gene == Gene Tiso_gene_3447 == * left end position: ** 12507 * transcription direction: ** POSITIVE * right end position: ** 13155 * centisome position: ** 74.986...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3447 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] ==
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* left end position:
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* direction:
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** 12507
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** riboflavin_biosynthesis_protein
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* right end position:
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* ec number:
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** 13155
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** [http://enzyme.expasy.org/EC/3.5.4.26 EC-3.5.4.26]
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* centisome position:
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** 74.98651   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-DEHYDROQUINATE-SYNTHASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''=>''' 1 ammonium[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c]
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* [[PWY-6164]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_1389]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=12507}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21868 21868]
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{{#set: right end position=13155}}
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* LIGAND-RXN:
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{{#set: centisome position=74.98651    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
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{{#set: reaction associated=3-DEHYDROQUINATE-SYNTHASE-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-6164}}
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{{#set: common name=riboflavin_biosynthesis_protein}}
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{{#set: ec number=EC-3.5.4.26}}
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{{#set: gene associated=Tiso_gene_1389}}
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{{#set: in pathway=RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:12, 10 January 2018

Reaction RIBOFLAVINSYNDEAM-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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