Difference between revisions of "RXN-1884"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-RIBAZOLE-5-P ALPHA-RIBAZOLE-5-P] == * smiles: ** CC2(C(C)=CC1(N(C=NC=1C=2)C3(C(O)C(O)C(CO...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ALPHA-RIBAZOLE-5-P ALPHA-RIBAZOLE-5-P] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC2(C(C)=CC1(N(C=NC=1C=2)C3(C(O)C(O)C(COP([O-])(=O)[O-])O3)))
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* inchi key:
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** InChIKey=ZMRGXEJKZPRBPJ-SYQHCUMBSA-L
 
* common name:
 
* common name:
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** histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
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** α-ribazole 5'-phosphate
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** ORF
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* molecular weight:
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** atp-dependent_rna_helicase_dhx30-like
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** 356.271   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.21 EC-6.1.1.21]
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* Synonym(s):
 
* Synonym(s):
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** N1-(5'-phospho-α-D-ribosyl)-5,6-dimethylbenzimidazole
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** DMB-ribose-5'-P
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** α-ribazole-5'-P
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RIBAZOLEPHOSPHAT-RXN]]
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** 1 [[HIS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HIS]][c] '''=>''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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* [[R04594]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 a tRNAhis[c] '''+''' 1 ATP[c] '''+''' 1 L-histidine[c] '''=>''' 1 an L-histidyl-[tRNAhis][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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== Reaction(s) of unknown directionality ==
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* [[RXN-16788]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8798]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13414]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12634]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17313 17313]
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** [http://www.genome.jp/dbget-bin/www_bget?C04778 C04778]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57918 57918]
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* UNIPROT:
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* BIGG : 5prdmbz
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** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/O58028 O58028]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=49791947 49791947]
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** [http://www.uniprot.org/uniprot/O67223 O67223]
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* HMDB : HMDB03882
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** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
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{{#set: smiles=CC2(C(C)=CC1(N(C=NC=1C=2)C3(C(O)C(O)C(COP([O-])(=O)[O-])O3)))}}
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** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
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{{#set: inchi key=InChIKey=ZMRGXEJKZPRBPJ-SYQHCUMBSA-L}}
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** [http://www.uniprot.org/uniprot/P56455 P56455]
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{{#set: common name=α-ribazole 5'-phosphate}}
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** [http://www.uniprot.org/uniprot/Q58406 Q58406]
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{{#set: molecular weight=356.271    }}
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** [http://www.uniprot.org/uniprot/O32039 O32039]
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{{#set: common name=N1-(5'-phospho-α-D-ribosyl)-5,6-dimethylbenzimidazole|DMB-ribose-5'-P|α-ribazole-5'-P}}
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** [http://www.uniprot.org/uniprot/O51160 O51160]
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{{#set: consumed by=RIBAZOLEPHOSPHAT-RXN|R04594}}
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** [http://www.uniprot.org/uniprot/O66522 O66522]
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{{#set: reversible reaction associated=RXN-16788}}
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** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
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** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
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** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
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** [http://www.uniprot.org/uniprot/P47281 P47281]
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** [http://www.uniprot.org/uniprot/O34459 O34459]
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** [http://www.uniprot.org/uniprot/O83647 O83647]
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** [http://www.uniprot.org/uniprot/O84547 O84547]
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** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
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** [http://www.uniprot.org/uniprot/P43823 P43823]
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** [http://www.uniprot.org/uniprot/Q61035 Q61035]
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** [http://www.uniprot.org/uniprot/P30053 P30053]
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** [http://www.uniprot.org/uniprot/P46696 P46696]
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** [http://www.uniprot.org/uniprot/P51348 P51348]
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** [http://www.uniprot.org/uniprot/P75069 P75069]
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** [http://www.uniprot.org/uniprot/Q55653 Q55653]
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** [http://www.uniprot.org/uniprot/Q49027 Q49027]
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** [http://www.uniprot.org/uniprot/P07263 P07263]
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** [http://www.uniprot.org/uniprot/P60906 P60906]
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** [http://www.uniprot.org/uniprot/P12081 P12081]
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** [http://www.uniprot.org/uniprot/P93422 P93422]
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** [http://www.uniprot.org/uniprot/O82413 O82413]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)}}
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{{#set: common name=ORF}}
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{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
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{{#set: ec number=EC-6.1.1.21}}
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{{#set: gene associated=Tiso_gene_8798|Tiso_gene_13414|Tiso_gene_12634}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:56, 18 March 2018

Metabolite ALPHA-RIBAZOLE-5-P

  • smiles:
    • CC2(C(C)=CC1(N(C=NC=1C=2)C3(C(O)C(O)C(COP([O-])(=O)[O-])O3)))
  • inchi key:
    • InChIKey=ZMRGXEJKZPRBPJ-SYQHCUMBSA-L
  • common name:
    • α-ribazole 5'-phosphate
  • molecular weight:
    • 356.271
  • Synonym(s):
    • N1-(5'-phospho-α-D-ribosyl)-5,6-dimethylbenzimidazole
    • DMB-ribose-5'-P
    • α-ribazole-5'-P

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC2(C(C)=CC1(N(C=NC=1C=2)C3(C(O)C(O)C(COP([O-])(=O)[O-])O3)))" cannot be used as a page name in this wiki.




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