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Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == | + | == Gene Tiso_gene_5879 == |
| − | * direction: | + | * left end position: |
| − | ** LEFT-TO-RIGHT | + | ** 5554 |
| − | * common name: | + | * transcription direction: |
| − | ** thymidylate_kinase | + | ** POSITIVE |
| − | * ec number: | + | * right end position: |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12] | + | ** 7482 |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13] | + | * centisome position: |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9] | + | ** 22.564394 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * [[GLUC1PURIDYLTRANS-RXN]] |
| − | ** 1 [[TMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[TDP]][c] '''+''' 1 [[ADP]][c]
| + | ** in-silico_annotation |
| − | * With common name(s):
| + | ***automated-name-match |
| − | ** 1 dTMP[c] '''+''' 1 ATP[c] '''=>''' 1 dTDP[c] '''+''' 1 ADP[c]
| + | == Pathways associated == |
| − | | + | * [[PWY-7343]] |
| − | == Genes associated with this reaction ==
| + | * [[PWY-3801]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | * [[PWY-7817]] |
| − | * [[Tiso_gene_3755]] | + | * [[PWY-6527]] |
| − | ** IN-SILICO_ANNOTATION | + | * [[PWY-7238]] |
| − | ***AUTOMATED-NAME-MATCH | + | |
| − | == Pathways == | + | |
| − | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210] | + | |
| − | ** '''8''' reactions found over '''8''' reactions in the full pathway
| + | |
| − | * [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] | + | |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] | + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187] | + | |
| − | ** '''4''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197] | + | |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
| + | |
| − | ** '''12''' reactions found over '''17''' reactions in the full pathway
| + | |
| − | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
| + | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: left end position=5554}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: right end position=7482}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
| + | {{#set: centisome position=22.564394 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=GLUC1PURIDYLTRANS-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/Q57741 Q57741]
| + | {{#set: pathway associated=PWY-7343|PWY-3801|PWY-7817|PWY-6527|PWY-7238}} |
| − | ** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A720 P0A720]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P33803 P33803]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P42490 P42490]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00572 P00572]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P68693 P68693]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P23919 P23919]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P36590 P36590]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O81650 O81650]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=thymidylate_kinase}} | + | |
| − | {{#set: ec number=EC-2.7.4.12}} | + | |
| − | {{#set: ec number=EC-2.7.4.13}} | + | |
| − | {{#set: ec number=EC-2.7.4.9}} | + | |
| − | {{#set: gene associated=Tiso_gene_3755}} | + | |
| − | {{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
