Difference between revisions of "4-COUMARATE--COA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF **...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** polyketide_synthase
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** plaunotol biosynthesis
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** ORF
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''3''' reactions in the full pathway
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PALMITATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PPI]][c]
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 palmitate[c] '''=>''' 1 AMP[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_16284]]
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*** [[Tiso_gene_7305]]
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== Genes associated with this reaction  ==
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** 6 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_9394]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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** [[pantograph]]-[[athaliana]]
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== Reaction(s) not found ==
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10626 RXN-10626]
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** [[pantograph]]-[[creinhardtii]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10627 RXN-10627]
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_12275]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
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{{#set: common name=plaunotol biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
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{{#set: total reaction=3}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=33.0}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=ORF}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_348|Tiso_gene_12275|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_4191}}
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{{#set: in pathway=PWY-5972|PWY-5971}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:01, 18 March 2018

Pathway PWY-6691

  • taxonomic range:
  • common name:
    • plaunotol biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=4-COUMARATE--COA-LIGASE-RXN&oldid=21321"