Difference between revisions of "CPD0-2105"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.4-RXN 3.1.26.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonuclease ** ORF *...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.4-RXN 3.1.26.4-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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* common name:
 
* common name:
−
** L-glutamate degradation VII (to butanoate)
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** ribonuclease
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** ORF
 +
* ec number:
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** [http://enzyme.expasy.org/EC/3.1.26.4 EC-3.1.26.4]
 
* Synonym(s):
 
* Synonym(s):
−
** L-glutamate fermentation
 
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** mesaconate pathway
 
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** L-glutamate degradation VII (to butyrate)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[CENTFERM-PWY]]
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** 1 [[RNA-DNA-hybrids]][c] '''+''' n [[WATER]][c] '''=>''' n [[Nucleoside-Monophosphates]][c] '''+''' 1 [[DNA-Holder]][c]
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* [[HYDROG-RXN]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 a RNA-DNA hybrid[c] '''+''' n H2O[c] '''=>''' n a nucleoside 5'-monophosphate[c] '''+''' 1 DNA[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5087 PWY-5087]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5087 PWY-5087]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_16584]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9459]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9453]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3410]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10743]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1239}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.uniprot.org/uniprot/P52975 P52975]
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{{#set: common name=L-glutamate degradation VII (to butanoate)}}
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** [http://www.uniprot.org/uniprot/Q9CDG3 Q9CDG3]
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{{#set: common name=L-glutamate fermentation|mesaconate pathway|L-glutamate degradation VII (to butyrate)}}
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** [http://www.uniprot.org/uniprot/Q9PM39 Q9PM39]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/Q9JX40 Q9JX40]
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{{#set: reaction not found=6}}
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** [http://www.uniprot.org/uniprot/P43807 P43807]
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/P43808 P43808]
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** [http://www.uniprot.org/uniprot/Q9PJA1 Q9PJA1]
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** [http://www.uniprot.org/uniprot/Q9CG17 Q9CG17]
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** [http://www.uniprot.org/uniprot/Q9JTD9 Q9JTD9]
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** [http://www.uniprot.org/uniprot/Q57599 Q57599]
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** [http://www.uniprot.org/uniprot/O44114 O44114]
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** [http://www.uniprot.org/uniprot/P0A7Y4 P0A7Y4]
 +
** [http://www.uniprot.org/uniprot/P10442 P10442]
 +
** [http://www.uniprot.org/uniprot/P13319 P13319]
 +
** [http://www.uniprot.org/uniprot/Q7LYY8 Q7LYY8]
 +
** [http://www.uniprot.org/uniprot/P0A2B9 P0A2B9]
 +
** [http://www.uniprot.org/uniprot/Q04740 Q04740]
 +
** [http://www.uniprot.org/uniprot/Q49050 Q49050]
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** [http://www.uniprot.org/uniprot/O69014 O69014]
 +
** [http://www.uniprot.org/uniprot/Q54222 Q54222]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ribonuclease}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.1.26.4}}
 +
{{#set: gene associated=Tiso_gene_16584|Tiso_gene_9459|Tiso_gene_9453|Tiso_gene_3410|Tiso_gene_10743}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:01, 18 March 2018

Reaction 3.1.26.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonuclease
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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