Difference between revisions of "CPD-8646"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.70-RXN 1.14.13.70-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expa...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.70-RXN 1.14.13.70-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.13.70 EC-1.14.13.70]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
 +
** (3R)-hydroxymyristoyl-ACP dehydratase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OBTUSIFOLIOL]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''+''' 3 [[NADPH]][c] '''+''' 2 [[PROTON]][c] '''=>''' 4 [[WATER]][c] '''+''' 1 [[ALPHA-METHYL-5-ALPHA-ERGOSTA]][c] '''+''' 1 [[FORMATE]][c] '''+''' 3 [[NADP]][c]
+
** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 obtusifoliol[c] '''+''' 3 oxygen[c] '''+''' 3 NADPH[c] '''+''' 2 H+[c] '''=>''' 4 H2O[c] '''+''' 1 4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol[c] '''+''' 1 formate[c] '''+''' 3 NADP+[c]
+
** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''=>''' 1 a trans tetradec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8263]]
+
* [[Tiso_gene_6671]]
−
** [[pantograph]]-[[esiliculosus]]
+
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_135]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_136]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_500]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6884]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_6885]]
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_13394]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9421]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_10876]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''10''' reactions found over '''36''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14917 14917]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05731 R05731]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.14.13.70}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: gene associated=Tiso_gene_8263}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: in pathway=PWY-2541}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=(3R)-hydroxymyristoyl-ACP dehydratase}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: gene associated=Tiso_gene_6671|Tiso_gene_135|Tiso_gene_136|Tiso_gene_500|Tiso_gene_6884|Tiso_gene_6885|Tiso_gene_13394|Tiso_gene_9421|Tiso_gene_10876}}
 +
{{#set: in pathway=PWY-5971|PWY-5994}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|orthology-creinhardtii|orthology-synechocystis|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:04, 18 March 2018

Reaction RXN-9537

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-8646&oldid=21710"