Difference between revisions of "2-Me-Branched-234-Sat-FALD"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1762 TAX-17...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1762 TAX-1762]
 
* common name:
 
* common name:
−
** cysteinyl-trna
+
** superpathway of mycolate biosynthesis
−
** cysteine--trna_ligase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''8''' reactions found over '''12''' reactions in the full pathway
−
** 1 [[ATP]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[CYS]][c] '''=>''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
* [[PWY-4381]]
−
* With common name(s):
+
** 0 associated gene:
−
** 1 ATP[c] '''+''' 1 a tRNAcys[c] '''+''' 1 L-cysteine[c] '''=>''' 1 an L-cysteinyl-[tRNAcys][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
* [[PWY-5971]]
−
 
+
** 0 associated gene:
−
== Genes associated with this reaction  ==
+
* [[PWY-5989]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 0 associated gene:
−
* [[Tiso_gene_10881]]
+
* [[PWYG-321]]
−
** IN-SILICO_ANNOTATION
+
** 0 associated gene:
−
***EC-NUMBER
+
* [[RXN-10059]]
−
** EXPERIMENTAL_ANNOTATION
+
** 4 associated gene(s):
−
***EC-NUMBER
+
*** [[Tiso_gene_5939]]
−
* [[Tiso_gene_17657]]
+
*** [[Tiso_gene_14485]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_19302]]
−
***EC-NUMBER
+
*** [[Tiso_gene_15991]]
−
** EXPERIMENTAL_ANNOTATION
+
** 3 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
== Pathways  ==
+
*** [[orthology-esiliculosus]]
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[RXN-10060]]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** 2 associated gene(s):
−
== Reconstruction information  ==
+
*** [[Tiso_gene_13083]]
−
* [[orthology]]:
+
*** [[Tiso_gene_9885]]
−
** [[pantograph]]:
+
** 3 reconstruction source(s) associated:
−
*** [[esiliculosus]]
+
*** [[annotation-experimental_annotation]]
−
* [[annotation]]:
+
*** [[annotation-in-silico_annotation]]
−
** [[pathwaytools]]:
+
*** [[orthology-esiliculosus]]
−
*** [[experimental_annotation]]
+
* [[RXN-10061]]
−
*** [[in-silico_annotation]]
+
** 1 associated gene(s):
 +
*** [[Tiso_gene_6884]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-10062]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-1762}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
+
{{#set: common name=superpathway of mycolate biosynthesis}}
−
* UNIPROT:
+
{{#set: reaction found=8}}
−
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
+
{{#set: total reaction=12}}
−
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
+
{{#set: completion rate=67.0}}
−
** [http://www.uniprot.org/uniprot/P43816 P43816]
+
−
** [http://www.uniprot.org/uniprot/O29836 O29836]
+
−
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
+
−
** [http://www.uniprot.org/uniprot/O58370 O58370]
+
−
** [http://www.uniprot.org/uniprot/O83129 O83129]
+
−
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
+
−
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
+
−
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
+
−
** [http://www.uniprot.org/uniprot/P41259 P41259]
+
−
** [http://www.uniprot.org/uniprot/O51545 O51545]
+
−
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
+
−
** [http://www.uniprot.org/uniprot/O67163 O67163]
+
−
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
+
−
** [http://www.uniprot.org/uniprot/P47495 P47495]
+
−
** [http://www.uniprot.org/uniprot/P75423 P75423]
+
−
** [http://www.uniprot.org/uniprot/P74330 P74330]
+
−
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
+
−
** [http://www.uniprot.org/uniprot/P21888 P21888]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=cysteinyl-trna}}
+
−
{{#set: common name=cysteine--trna_ligase}}
+
−
{{#set: ec number=EC-6.1.1.16}}
+
−
{{#set: gene associated=Tiso_gene_10881|Tiso_gene_17657}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:14, 18 March 2018

Pathway PWY-6113

  • taxonomic range:
  • common name:
    • superpathway of mycolate biosynthesis
  • Synonym(s):

Reaction(s) found

8 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2-Me-Branched-234-Sat-FALD&oldid=22901"