Difference between revisions of "Tiso gene 10338"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** cis-aconitate...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** cis-aconitate hydratase
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** L-ascorbate biosynthesis I (L-galactose pathway)
 
* Synonym(s):
 
* Synonym(s):
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** vitamin C biosynthesis
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** ascorbic acid biosynthesis
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** L-ascorbic acid biosynthesis I
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** Smirnoff-Wheeler pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''8''' reactions in the full pathway
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** 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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* [[2.7.7.13-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 cis-aconitate[c] '''+''' 1 H2O[c] '''<=>''' 1 D-threo-isocitrate[c]
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*** [[Tiso_gene_14704]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GALACTONOLACTONE-DEHYDROGENASE-RXN]]
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* [[Tiso_gene_13007]]
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** 1 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_210]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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*** [[orthology-esiliculosus]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PHOSMANMUT-RXN]]
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** 4 associated gene(s):
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** '''9''' reactions found over '''12''' reactions in the full pathway
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*** [[Tiso_gene_5802]]
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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*** [[Tiso_gene_13477]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_4816]]
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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*** [[Tiso_gene_14704]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** 6 reconstruction source(s) associated:
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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*** [[annotation-experimental_annotation]]
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** '''5''' reactions found over '''12''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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*** [[annotation-in-silico_annotation]]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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*** [[orthology-synechocystis]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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* [[RXN-1882]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 1 associated gene(s):
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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*** [[Tiso_gene_6621]]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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*** [[orthology-athaliana]]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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* [[RXN-1884]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** 5 associated gene(s):
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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*** [[Tiso_gene_14920]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_14624]]
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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*** [[Tiso_gene_18748]]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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*** [[Tiso_gene_703]]
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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*** [[Tiso_gene_4219]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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*** [[orthology-athaliana]]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[RXNQT-4142]]
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* [[annotation]]:
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** 3 associated gene(s):
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** [[pathwaytools]]:
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*** [[Tiso_gene_10754]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_15599]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_11614]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MANNPISOM-RXN MANNPISOM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXNQT-4141 RXNQT-4141]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22144 22144]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-882 PWY-882]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
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{{#set: common name=L-ascorbate biosynthesis I (L-galactose pathway)}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=vitamin C biosynthesis|ascorbic acid biosynthesis|L-ascorbic acid biosynthesis I|Smirnoff-Wheeler pathway}}
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{{#set: common name=cis-aconitate hydratase}}
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{{#set: reaction found=6}}
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{{#set: gene associated=Tiso_gene_13007}}
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{{#set: total reaction=8}}
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{{#set: in pathway=PWY-5913|PWY-6969|PWY-5690|REDCITCYC|PWY-5392|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|PWY-7124|PWY66-398|TCA}}
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{{#set: completion rate=75.0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:22, 18 March 2018

Pathway PWY-882

  • taxonomic range:
  • common name:
    • L-ascorbate biosynthesis I (L-galactose pathway)
  • Synonym(s):
    • vitamin C biosynthesis
    • ascorbic acid biosynthesis
    • L-ascorbic acid biosynthesis I
    • Smirnoff-Wheeler pathway

Reaction(s) found

6 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10338&oldid=23828"