Difference between revisions of "PWY-5661"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...") |
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Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** ORF |
− | ** | + | ** delta-1-pyrroline-5-carboxylate_synthase |
+ | ** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''=>''' 1 L-glutamate[c] '''+''' 1 NADH[c] '''+''' 2 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * [[Tiso_gene_18337]] |
+ | ** IN-SILICO_ANNOTATION | ||
+ | ***EC-NUMBER | ||
** EXPERIMENTAL_ANNOTATION | ** EXPERIMENTAL_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
− | ** [[pantograph]]-[[ | + | * [[Tiso_gene_18338]] |
− | ** [[pantograph]]-[[ | + | ** IN-SILICO_ANNOTATION |
− | * [[ | + | ***EC-NUMBER |
+ | * [[Tiso_gene_886]] | ||
+ | ** [[pantograph]]-[[synechocystis]] | ||
+ | * [[Tiso_gene_9680]] | ||
+ | ** [[pantograph]]-[[synechocystis]] | ||
+ | * [[Tiso_gene_6952]] | ||
+ | ** [[pantograph]]-[[synechocystis]] | ||
+ | * [[Tiso_gene_16634]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
** EXPERIMENTAL_ANNOTATION | ** EXPERIMENTAL_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
− | ** [[pantograph]]-[[ | + | * [[Tiso_gene_3513]] |
− | * [[ | + | ** [[pantograph]]-[[synechocystis]] |
+ | * [[Tiso_gene_7381]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
− | *** | + | ***EC-NUMBER |
+ | ** EXPERIMENTAL_ANNOTATION | ||
+ | ***EC-NUMBER | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY] |
− | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
+ | * [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]] | + | * Category: [[orthology]] |
− | ** [[ | + | ** Source: [[orthology-synechocystis]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
− | * | + | * Category: [[annotation]] |
− | * [[annotation]] | + | ** Source: [[annotation-experimental_annotation]] |
− | ** [[pathwaytools]] | + | *** Tool: [[pathwaytools]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | *** [[ | + | *** Tool: [[pathwaytools]] |
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245] |
− | + | ||
− | + | ||
− | + | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=ORF}} |
− | {{#set: common name= | + | {{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}} |
− | {{#set: ec number=EC- | + | {{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}} |
− | {{#set: gene associated= | + | {{#set: ec number=EC-1.2.1.88}} |
− | {{#set: in pathway= | + | {{#set: gene associated=Tiso_gene_18337|Tiso_gene_18338|Tiso_gene_886|Tiso_gene_9680|Tiso_gene_6952|Tiso_gene_16634|Tiso_gene_3513|Tiso_gene_7381}} |
− | {{#set: reconstruction category=orthology | + | {{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}} |
− | + | {{#set: reconstruction category=orthology|annotation}} | |
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-synechocystis}} |
− | + | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
− | {{#set: reconstruction tool= | + | |
− | + |
Revision as of 18:28, 18 March 2018
Contents
Reaction RXN-14116
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- delta-1-pyrroline-5-carboxylate_synthase
- delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 NAD+[c] + 1 H2O[c] + 1 L-glutamate-5-semialdehyde[c] => 1 L-glutamate[c] + 1 NADH[c] + 2 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_18337
- IN-SILICO_ANNOTATION
- EC-NUMBER
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
- Tiso_gene_18338
- IN-SILICO_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
- Tiso_gene_886
- Tiso_gene_9680
- Tiso_gene_6952
- Tiso_gene_16634
- IN-SILICO_ANNOTATION
- EC-NUMBER
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
- Tiso_gene_3513
- Tiso_gene_7381
- IN-SILICO_ANNOTATION
- EC-NUMBER
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
Pathways
- PROUT-PWY, L-proline degradation: PROUT-PWY
- 3 reactions found over 3 reactions in the full pathway
- ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-6853, ethylene biosynthesis II (microbes): PWY-6853
- 2 reactions found over 5 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-synechocystis
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links