Difference between revisions of "Tiso gene 3462"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMET-RXN HOMOCYSMET-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10625 RXN-10625] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMET-RXN HOMOCYSMET-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10625 RXN-10625] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** geranylgeranyl_diphosphate_reductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.14 EC-2.1.1.14]
+
** [http://enzyme.expasy.org/EC/1.3.1.83 EC-1.3.1.83]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-1302]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[CPD-1301]][c] '''+''' 1 [[MET]][c]
+
** 3 [[NADPH]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''=>''' 3 [[NADP]][c] '''+''' 1 [[PHYTYL-PYROPHOSPHATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 N5-methyl--tetrahydropteroyl tri-L-glutamate[c] '''+''' 1 L-homocysteine[c] '''<=>''' 1 tetrahydropteroyl tri-L-glutamate[c] '''+''' 1 L-methionine[c]
+
** 3 NADPH[c] '''+''' 3 H+[c] '''+''' 1 geranylgeranyl diphosphate[c] '''=>''' 3 NADP+[c] '''+''' 1 phytyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1602]]
+
* [[Tiso_gene_2613]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-702]], L-methionine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-702 PWY-702]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6151]], S-adenosyl-L-methionine cycle I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6151 PWY-6151]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21196 21196]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26229 26229]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02063 R02063]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P25665 P25665]
+
{{#set: common name=geranylgeranyl_diphosphate_reductase}}
−
** [http://www.uniprot.org/uniprot/P45331 P45331]
+
{{#set: ec number=EC-1.3.1.83}}
−
** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94]
+
{{#set: gene associated=Tiso_gene_2613}}
−
** [http://www.uniprot.org/uniprot/O26869 O26869]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55]
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|orthology-creinhardtii}}
−
** [http://www.uniprot.org/uniprot/P05694 P05694]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q42699 Q42699]
+
−
** [http://www.uniprot.org/uniprot/Q39586 Q39586]
+
−
** [http://www.uniprot.org/uniprot/O48613 O48613]
+
−
** [http://www.uniprot.org/uniprot/P93263 P93263]
+
−
** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.1.1.14}}
+
−
{{#set: gene associated=Tiso_gene_1602}}
+
−
{{#set: in pathway=HOMOSER-METSYN-PWY|PWY-702|HSERMETANA-PWY|PWY-6151|PWY-5041}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:36, 18 March 2018

Reaction RXN-10625

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • geranylgeranyl_diphosphate_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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