Difference between revisions of "3-Hydroxyglutaryl-ACP-methyl-ester"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HYDROXY-METHYL-BUTENYL-DIP HYDROXY-METHYL-BUTENYL-DIP] == * smiles: ** CC(CO)=CCOP(OP([O-])(=O)...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HYDROXY-METHYL-BUTENYL-DIP HYDROXY-METHYL-BUTENYL-DIP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CC(CO)=CCOP(OP([O-])(=O)[O-])(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=MDSIZRKJVDMQOQ-GORDUTHDSA-K
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* common name:
 
* common name:
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** (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
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** ORF
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* molecular weight:
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* ec number:
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** 259.069   
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** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
 
* Synonym(s):
 
* Synonym(s):
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** (E)-4-hydroxy-3-methylbut 2-en-1-yl diphosphate
 
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** HMBDP
 
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** 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ISPH2-RXN]]
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* With identifiers:
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* [[RXN0-884]]
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** 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[VAL-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c]
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* [[IDS2]]
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* With common name(s):
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* [[R07219]]
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** 1 ATP[c] '''+''' 1 L-valine[c] '''+''' 1 a tRNAval[c] '''=>''' 1 AMP[c] '''+''' 1 an L-valyl-[tRNAval][c] '''+''' 1 diphosphate[c]
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* [[IDS1]]
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== Reaction(s) known to produce the compound ==
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== Genes associated with this reaction  ==
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* [[RXN0-882]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15878]]
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* [[Tiso_gene_1372]]
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== Reaction(s) of unknown directionality ==
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** EXPERIMENTAL_ANNOTATION
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* [[HDS]]
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8041]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=21597501 21597501]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
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* CHEMSPIDER:
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* LIGAND-RXN:
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** [http://www.chemspider.com/Chemical-Structure.10224038.html 10224038]
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** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=128753 128753]
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** [http://www.uniprot.org/uniprot/P28350 P28350]
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* BIGG : h2mb4p
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** [http://www.uniprot.org/uniprot/P36420 P36420]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P56000 P56000]
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** [http://www.genome.jp/dbget-bin/www_bget?C11811 C11811]
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** [http://www.uniprot.org/uniprot/O51680 O51680]
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{{#set: smiles=CC(CO)=CCOP(OP([O-])(=O)[O-])(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/O67411 O67411]
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{{#set: inchi key=InChIKey=MDSIZRKJVDMQOQ-GORDUTHDSA-K}}
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** [http://www.uniprot.org/uniprot/O83998 O83998]
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{{#set: common name=(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate}}
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** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
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{{#set: molecular weight=259.069    }}
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** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
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{{#set: common name=(E)-4-hydroxy-3-methylbut 2-en-1-yl diphosphate|HMBDP|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate}}
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** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
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{{#set: consumed by=ISPH2-RXN|RXN0-884|IDS2|R07219|IDS1}}
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** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
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{{#set: produced by=RXN0-882|RXN-15878}}
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** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
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{{#set: consumed or produced by=HDS}}
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** [http://www.uniprot.org/uniprot/Q58413 Q58413]
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** [http://www.uniprot.org/uniprot/P43834 P43834]
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** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
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** [http://www.uniprot.org/uniprot/O84304 O84304]
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** [http://www.uniprot.org/uniprot/P47576 P47576]
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** [http://www.uniprot.org/uniprot/Q94678 Q94678]
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** [http://www.uniprot.org/uniprot/Q04462 Q04462]
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** [http://www.uniprot.org/uniprot/P26640 P26640]
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** [http://www.uniprot.org/uniprot/Q05873 Q05873]
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** [http://www.uniprot.org/uniprot/Q26177 Q26177]
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** [http://www.uniprot.org/uniprot/P75304 P75304]
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** [http://www.uniprot.org/uniprot/Q49021 Q49021]
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** [http://www.uniprot.org/uniprot/P11931 P11931]
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** [http://www.uniprot.org/uniprot/P07806 P07806]
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** [http://www.uniprot.org/uniprot/P07118 P07118]
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** [http://www.uniprot.org/uniprot/O77443 O77443]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.1.1.9}}
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{{#set: gene associated=Tiso_gene_1372|Tiso_gene_8041}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:03, 19 March 2018

Reaction VALINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-valine[c] + 1 a tRNAval[c] => 1 AMP[c] + 1 an L-valyl-[tRNAval][c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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