Difference between revisions of "RXN-4230"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 1-deoxy-d-xylulose_5...")
(Created page with "Category:Gene == Gene Tiso_gene_8397 == * left end position: ** 1 * transcription direction: ** POSITIVE * right end position: ** 424 * centisome position: ** 9.714396600e...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] ==
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== Gene Tiso_gene_8397 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 1
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* common name:
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* transcription direction:
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** 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.1.1.267 EC-1.1.1.267]
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** 424
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* centisome position:
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** 9.714396600e-3
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[RNA-LIGASE-ATP-RXN]]
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** 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 2-C-methyl-D-erythritol 4-phosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 1-deoxy-D-xylulose 5-phosphate[c]
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* [[RXN-17925]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-17926]]
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* [[Tiso_gene_15169]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-17927]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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** [[pantograph]]-[[athaliana]]
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== Pathways associated ==
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=1}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13717 13717]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=424}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
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{{#set: centisome position=9.714396600e-3}}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=RNA-LIGASE-ATP-RXN|RXN-17925|RXN-17926|RXN-17927}}
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{{#set: common name=1-deoxy-d-xylulose_5-phosphate_reductoisomerase}}
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{{#set: ec number=EC-1.1.1.267}}
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{{#set: gene associated=Tiso_gene_15169}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 00:08, 19 March 2018

Gene Tiso_gene_8397

  • left end position:
    • 1
  • transcription direction:
    • POSITIVE
  • right end position:
    • 424
  • centisome position:
    • 9.714396600e-3
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-4230&oldid=28888"