Difference between revisions of "Tiso gene 18908"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] == * smiles: ** C1(C(=CC(=C(C=1)O)CC([O-])=O)O) * inchi key: ** In...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13039 RXN-13039] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoate-protein_ligase_a **...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13039 RXN-13039] ==
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* smiles:
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* direction:
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** C1(C(=CC(=C(C=1)O)CC([O-])=O)O)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M
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* common name:
 
* common name:
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** homogentisate
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** lipoate-protein_ligase_a
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* molecular weight:
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** lipoate-protein_ligase
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** 167.141   
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* Synonym(s):
 
* Synonym(s):
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** 2,5-dihydroxyphenylacetate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[HGDO]]
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* With identifiers:
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* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
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** 1 [[LIPOYL-AMP]][c] '''+''' 1 [[Gcv-H]][c] '''=>''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-2541]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 lipoyl-adenylate[c] '''+''' 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''=>''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 2 H+[c] '''+''' 1 AMP[c]
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* [[HPPD]]
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17215]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_8713]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_4494]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17216]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_4493]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6984]], lipoate salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6984 PWY-6984]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460389 5460389]
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{{#set: common name=lipoate-protein_ligase_a}}
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* HMDB : HMDB00130
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{{#set: common name=lipoate-protein_ligase}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_17215|Tiso_gene_8713|Tiso_gene_4494|Tiso_gene_17216|Tiso_gene_4493}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00544 C00544]
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{{#set: in pathway=PWY-6984}}
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* CHEMSPIDER:
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{{#set: reconstruction category=annotation}}
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** [http://www.chemspider.com/Chemical-Structure.4573931.html 4573931]
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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* CHEBI:
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16169 16169]
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* METABOLIGHTS : MTBLC16169
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{{#set: smiles=C1(C(=CC(=C(C=1)O)CC([O-])=O)O)}}
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{{#set: inchi key=InChIKey=IGMNYECMUMZDDF-UHFFFAOYSA-M}}
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{{#set: common name=homogentisate}}
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{{#set: molecular weight=167.141    }}
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{{#set: common name=2,5-dihydroxyphenylacetate}}
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{{#set: consumed by=HGDO|HOMOGENTISATE-12-DIOXYGENASE-RXN|RXN-2541}}
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{{#set: produced by=HPPD|4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN}}
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Revision as of 00:09, 19 March 2018

Reaction RXN-13039

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lipoate-protein_ligase_a
    • lipoate-protein_ligase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 lipoyl-adenylate[c] + 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] => 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] + 2 H+[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6984, lipoate salvage II: PWY-6984
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18908&oldid=28961"