Difference between revisions of "MALONATE-S-ALD"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphomethylpyrimi...")
(Created page with "Category:Gene == Gene Tiso_gene_14984 == * left end position: ** 3186 * transcription direction: ** NEGATIVE * right end position: ** 5089 * centisome position: ** 60.0678...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
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== Gene Tiso_gene_14984 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3186
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* common name:
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* transcription direction:
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** phosphomethylpyrimidine_kinase
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** NEGATIVE
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** thiamine_monophosphate_synthase
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* right end position:
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* ec number:
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** 5089
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** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7]
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* centisome position:
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** 60.067875   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[ADP]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 ATP[c] '''+''' 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''=>''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 ADP[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17192]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_16224]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_2160]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2159]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[ILEUSYN-PWY]]
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***EC-NUMBER
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* [[ILEUDEG-PWY]]
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== Pathways ==
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* [[LEU-DEG2-PWY]]
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* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
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* [[VALDEG-PWY]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5057]]
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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* [[VALSYN-PWY]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7767]]
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* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
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* [[PWY-5108]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5076]]
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* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
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* [[PWY-5103]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5101]]
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* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
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* [[PWY-5078]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[ALANINE-VALINESYN-PWY]]
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== Reconstruction information  ==
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* [[LEUSYN-PWY]]
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* [[orthology]]:
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* [[PWY-5104]]
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3186}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5089}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
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{{#set: centisome position=60.067875    }}
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* UNIPROT:
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{{#set: reaction associated=BRANCHED-CHAINAMINOTRANSFERILEU-RXN|BRANCHED-CHAINAMINOTRANSFERLEU-RXN|BRANCHED-CHAINAMINOTRANSFERVAL-RXN}}
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** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
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{{#set: pathway associated=ILEUSYN-PWY|ILEUDEG-PWY|LEU-DEG2-PWY|VALDEG-PWY|PWY-5057|VALSYN-PWY|PWY-7767|PWY-5108|PWY-5076|PWY-5103|PWY-5101|PWY-5078|ALANINE-VALINESYN-PWY|LEUSYN-PWY|PWY-5104}}
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** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
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** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
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** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphomethylpyrimidine_kinase}}
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{{#set: common name=thiamine_monophosphate_synthase}}
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{{#set: ec number=EC-2.7.4.7}}
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{{#set: gene associated=Tiso_gene_17192|Tiso_gene_16224|Tiso_gene_2160|Tiso_gene_2159}}
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{{#set: in pathway=PWY-6910|PWY-7282|PWY-6890|PWY-7356|PWY-7357}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 00:14, 19 March 2018

Gene Tiso_gene_14984

  • left end position:
    • 3186
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5089
  • centisome position:
    • 60.067875
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=MALONATE-S-ALD&oldid=29333"