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| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == | + | == Gene Tiso_gene_17759 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 5071 |
| − | * common name: | + | * transcription direction: |
| − | ** dna_ligase | + | ** NEGATIVE |
| − | ** dna_ligase_mrna_capping_enzyme | + | * left end position: |
| − | ** ORF
| + | ** 2065 |
| − | * ec number:
| + | * centisome position: |
| − | ** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7] | + | ** 38.368637 |
| − | ** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1] | + | |
| − | ** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6] | + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[3.2.1.18-RXN]] |
| − | ** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 ATP[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 DNAn[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_3498]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_14250]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_11251]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_6743]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_14249]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_12142]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | == Pathways ==
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[annotation]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: ec-number |
| | + | == Pathways associated == |
| | == External links == | | == External links == |
| − | * LIGAND-RXN:
| + | {{#set: right end position=5071}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
| + | {{#set: transcription direction=NEGATIVE}} |
| − | * UNIPROT:
| + | {{#set: left end position=2065}} |
| − | ** [http://www.uniprot.org/uniprot/P12000 P12000]
| + | {{#set: centisome position=38.368637 }} |
| − | ** [http://www.uniprot.org/uniprot/P18858 P18858]
| + | {{#set: reaction associated=3.2.1.18-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/P35970 P35970]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q57635 Q57635]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P49917 P49917]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P49916 P49916]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P37913 P37913]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P51892 P51892]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P16272 P16272]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P33798 P33798]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00970 P00970]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00969 P00969]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P04819 P04819]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P19088 P19088]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P07717 P07717]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P26813 P26813]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q02093 Q02093]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q23694 Q23694]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q67480 Q67480]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42572 Q42572]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P20492 P20492]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=dna_ligase}} | + | |
| − | {{#set: common name=dna_ligase_mrna_capping_enzyme}} | + | |
| − | {{#set: common name=ORF}} | + | |
| − | {{#set: ec number=EC-6.5.1.7}}
| + | |
| − | {{#set: ec number=EC-6.5.1.1}} | + | |
| − | {{#set: ec number=EC-6.5.1.6}}
| + | |
| − | {{#set: gene associated=Tiso_gene_3498|Tiso_gene_14250|Tiso_gene_11251|Tiso_gene_6743|Tiso_gene_14249|Tiso_gene_12142}}
| + | |
| − | {{#set: in pathway=}}
| + | |
| − | {{#set: reconstruction category=orthology|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
