Difference between revisions of "PWY-7255"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1884 RXN-1884] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1884 RXN-1884] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** 4-aminobutanoate degradation V
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** [http://enzyme.expasy.org/EC/1.1.1.316 EC-1.1.1.316]
 
* Synonym(s):
 
* Synonym(s):
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** GABA degradation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[L-Galactopyranose]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-330]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_91]]
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** 1 NAD+[c] '''+''' 1 L-galactopyranose[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 L-galactono-1,4-lactone[c]
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*** [[Tiso_gene_777]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GABATRANSAM-RXN]]
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* Gene: [[Tiso_gene_14920]]
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_11231]]
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* Gene: [[Tiso_gene_14624]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_18748]]
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* [[GLUTAMATE-DEHYDROGENASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_703]]
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*** [[Tiso_gene_2337]]
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_4219]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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== Reaction(s) not found ==
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* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=R11-RXN R11-RXN]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8889 RXN-8889]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1239}}
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* RHEA:
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{{#set: common name=4-aminobutanoate degradation V}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31562 31562]
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{{#set: common name=GABA degradation}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07675 R07675]
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{{#set: total reaction=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=43.0}}
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{{#set: ec number=EC-1.1.1.316}}
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{{#set: gene associated=Tiso_gene_14920|Tiso_gene_14624|Tiso_gene_18748|Tiso_gene_703|Tiso_gene_4219}}
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{{#set: in pathway=PWY-882}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 14:48, 21 March 2018

Reaction RXN-1884

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 L-galactopyranose[c] => 1 H+[c] + 1 NADH[c] + 1 L-galactono-1,4-lactone[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway): PWY-882
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7255&oldid=30329"