Difference between revisions of "4-TRIMETHYLAMMONIOBUTANAL"

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(Created page with "Category:Gene == Gene Tiso_gene_18105 == * left end position: ** 116 * transcription direction: ** POSITIVE * right end position: ** 2865 * centisome position: ** 3.570329...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan transpeptidas...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_18105 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] ==
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* left end position:
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* direction:
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** 116
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** peptidoglycan transpeptidase (Gram-negative bacteria)
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* right end position:
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** beta-lactamase
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** 2865
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
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** 3.5703294   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3.6.3.50-RXN]]
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* With identifiers:
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** [[pantograph]]-[[esiliculosus]]
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** 1 [[CPD-17927]][c] '''+''' 1 [[CPD-17931]][c] '''=>''' 1 [[D-ALANINE]][c] '''+''' 1 [[CPD-17932]][c]
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* [[ATPASE-RXN]]
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''=>''' 1 D-alanine[c] '''+''' 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c]
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* [[ATPSYN-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** experimental_annotation
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* Gene: [[Tiso_gene_18870]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-7219]]
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== Pathways  ==
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* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
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** '''2''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=116}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=peptidoglycan transpeptidase (Gram-negative bacteria)}}
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{{#set: right end position=2865}}
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{{#set: common name=beta-lactamase}}
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{{#set: centisome position=3.5703294    }}
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{{#set: ec number=EC-3.4.16.4}}
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{{#set: reaction associated=3.6.3.50-RXN|ATPASE-RXN|ATPSYN-RXN}}
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{{#set: gene associated=Tiso_gene_18870}}
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{{#set: pathway associated=PWY-7219}}
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{{#set: in pathway=PWY0-1586}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:05, 21 March 2018

Reaction RXN-16659

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidoglycan transpeptidase (Gram-negative bacteria)
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] + 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] => 1 D-alanine[c] + 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1586, peptidoglycan maturation (meso-diaminopimelate containing): PWY0-1586
    • 2 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=4-TRIMETHYLAMMONIOBUTANAL&oldid=32335"