Difference between revisions of "PWY-5109"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5466 RXN-5466] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DNA-containing-a-Apyrimidinic-Sites DNA-containing-a-Apyrimidinic-Sites] == * common name: ** a...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5466 RXN-5466] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DNA-containing-a-Apyrimidinic-Sites DNA-containing-a-Apyrimidinic-Sites] ==
* direction:
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* common name:
** LEFT-TO-RIGHT
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** an apyrimidinic site in DNA
* ec number:
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** [http://enzyme.expasy.org/EC/2.4.1.258 EC-2.4.1.258]
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* Synonym(s):
 
* Synonym(s):
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** a DNA containing an apyrimidinic site
  
== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
* With identifiers:
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== Reaction(s) known to produce the compound ==
** 1 [[CPD-5164]][c] '''+''' 1 [[CPD-171]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-5165]][c] '''+''' 1 [[DOLICHOLP]][c]
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* [[RXN0-2584]]
* With common name(s):
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* [[3.2.2.17-RXN]]
** 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl β-D-mannosyl phosphate[c] '''=>''' 1 H+[c] '''+''' 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl phosphate[c]
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* [[RXN0-2601]]
 
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== Reaction(s) of unknown directionality ==
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8232]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: common name=an apyrimidinic site in DNA}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29530 29530]
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{{#set: common name=a DNA containing an apyrimidinic site}}
* LIGAND-RXN:
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{{#set: produced by=RXN0-2584|3.2.2.17-RXN|RXN0-2601}}
** [http://www.genome.jp/dbget-bin/www_bget?R06258 R06258]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.4.1.258}}
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{{#set: gene associated=Tiso_gene_8232}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:10, 21 March 2018

Metabolite DNA-containing-a-Apyrimidinic-Sites

  • common name:
    • an apyrimidinic site in DNA
  • Synonym(s):
    • a DNA containing an apyrimidinic site

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links