Difference between revisions of "CPD-2747"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_19966 == * Synonym(s): == Reactions associated == * ADENOSINETRIPHOSPHATASE-RXN ** pantograph-esiliculosus == Pathways associa...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** 6-ph...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] == |
+ | * direction: | ||
+ | ** LEFT-TO-RIGHT | ||
+ | * common name: | ||
+ | ** ORF | ||
+ | ** 6-phosphogluconolactonase | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/3.1.1.31 EC-3.1.1.31] | ||
* Synonym(s): | * Synonym(s): | ||
− | == | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | ** [[ | + | ** 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-2961]][c] '''+''' 1 [[PROTON]][c] |
− | == Pathways | + | * With common name(s): |
+ | ** 1 6-phospho D-glucono-1,5-lactone[c] '''+''' 1 H2O[c] '''=>''' 1 D-gluconate 6-phosphate[c] '''+''' 1 H+[c] | ||
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[Tiso_gene_10799]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_20412]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_5901]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_15950]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_8585]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | == Pathways == | ||
+ | * [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] | ||
+ | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I: [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS-E-D]], superpathway of glycolysis and Entner-Doudoroff: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12556 12556] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02035 R02035] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P63337 P63337] | ||
+ | {{#set: direction=LEFT-TO-RIGHT}} | ||
+ | {{#set: common name=ORF}} | ||
+ | {{#set: common name=6-phosphogluconolactonase}} | ||
+ | {{#set: ec number=EC-3.1.1.31}} | ||
+ | {{#set: gene associated=Tiso_gene_10799|Tiso_gene_20412|Tiso_gene_5901|Tiso_gene_15950|Tiso_gene_8585}} | ||
+ | {{#set: in pathway=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}} | ||
+ | {{#set: reconstruction category=orthology|manual|annotation}} | ||
+ | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 15:33, 21 March 2018
Contents
Reaction 6PGLUCONOLACT-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- 6-phosphogluconolactonase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 D-6-P-GLUCONO-DELTA-LACTONE[c] + 1 WATER[c] => 1 CPD-2961[c] + 1 PROTON[c]
- With common name(s):
- 1 6-phospho D-glucono-1,5-lactone[c] + 1 H2O[c] => 1 D-gluconate 6-phosphate[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_10799
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_20412
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5901
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_15950
- Source: orthology-athaliana
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Gene: Tiso_gene_8585
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
Pathways
- P122-PWY, heterolactic fermentation: P122-PWY
- 14 reactions found over 18 reactions in the full pathway
- RUMP-PWY, formaldehyde oxidation I: RUMP-PWY
- 3 reactions found over 6 reactions in the full pathway
- OXIDATIVEPENT-PWY, pentose phosphate pathway (oxidative branch) I: OXIDATIVEPENT-PWY
- 3 reactions found over 3 reactions in the full pathway
- GLYCOLYSIS-E-D, superpathway of glycolysis and Entner-Doudoroff: GLYCOLYSIS-E-D
- 4 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links