Difference between revisions of "DCMP-DEAMINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] == * smiles: ** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O
 
* common name:
 
* common name:
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** diaminopimelate_decarboxylase
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** (R)-3-hydroxyvaleryl-CoA
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
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** InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J
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* molecular weight:
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** 863.619   
 
* Synonym(s):
 
* Synonym(s):
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** D-β-hydroxyvaleryl-CoA
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-12560]]
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** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10737]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_12041]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=54758578 54758578]
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* LIGAND-RXN:
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{{#set: smiles=CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
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{{#set: common name=(R)-3-hydroxyvaleryl-CoA}}
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* UNIPROT:
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{{#set: inchi key=InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J}}
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** [http://www.uniprot.org/uniprot/P19572 P19572]
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{{#set: molecular weight=863.619    }}
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** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
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{{#set: common name=D-β-hydroxyvaleryl-CoA}}
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** [http://www.uniprot.org/uniprot/P44316 P44316]
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{{#set: reversible reaction associated=RXN-12560}}
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** [http://www.uniprot.org/uniprot/P56129 P56129]
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** [http://www.uniprot.org/uniprot/O67262 O67262]
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** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
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** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
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** [http://www.uniprot.org/uniprot/P00861 P00861]
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** [http://www.uniprot.org/uniprot/O27390 O27390]
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** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
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** [http://www.uniprot.org/uniprot/Q58497 Q58497]
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** [http://www.uniprot.org/uniprot/O29458 O29458]
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** [http://www.uniprot.org/uniprot/P41023 P41023]
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** [http://www.uniprot.org/uniprot/P23630 P23630]
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** [http://www.uniprot.org/uniprot/P09890 P09890]
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** [http://www.uniprot.org/uniprot/Q55484 Q55484]
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** [http://www.uniprot.org/uniprot/O05321 O05321]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=diaminopimelate_decarboxylase}}
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{{#set: ec number=EC-4.1.1.20}}
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{{#set: gene associated=Tiso_gene_10737|Tiso_gene_12041}}
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{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:36, 21 March 2018

Metabolite CPD-13533

  • smiles:
    • CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O
  • common name:
    • (R)-3-hydroxyvaleryl-CoA
  • inchi key:
    • InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J
  • molecular weight:
    • 863.619
  • Synonym(s):
    • D-β-hydroxyvaleryl-CoA

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O" cannot be used as a page name in this wiki.



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