Difference between revisions of "RXN-11375"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DNA-N DNA-N] == * common name: ** DNAn * Synonym(s): ** DNA(N) == Reaction(s) known to consume...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9516 RXN-9516] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-hexanoyl-[acyl-carrier...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DNA-N DNA-N] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9516 RXN-9516] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** DNAn
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** 3-oxo-hexanoyl-[acyl-carrier protein] synthase
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** 3-oxoacyl-synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
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** DNA(N)
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
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* With identifiers:
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* [[RXN0-4961]]
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** 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
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** 1 a butyryl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-hexanoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c]
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* [[DNA-LIGASE-ATP-RXN]]
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* [[RXN-17919]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[RNA-DIRECTED-DNA-POLYMERASE-RXN]]
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* Gene: [[Tiso_gene_5939]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14485]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15991]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_19302]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=DNAn}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=DNA(N)}}
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{{#set: common name=3-oxo-hexanoyl-[acyl-carrier protein] synthase}}
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{{#set: consumed by=DNA-DIRECTED-DNA-POLYMERASE-RXN|RXN0-4961}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: produced by=DNA-DIRECTED-DNA-POLYMERASE-RXN|DNA-LIGASE-ATP-RXN|RXN-17919}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: reversible reaction associated=RNA-DIRECTED-DNA-POLYMERASE-RXN}}
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{{#set: gene associated=Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_15991|Tiso_gene_19302}}
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{{#set: in pathway=PWY-5971|PWY-7388}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:47, 21 March 2018

Reaction RXN-9516

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-hexanoyl-[acyl-carrier protein] synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

"3-oxo-hexanoyl-[acyl-carrier protein] synthase" cannot be used as a page name in this wiki.




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