Difference between revisions of "CARBON-DIOXIDE"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRENAL PRENAL] == * smiles: ** CC(=CC=O)C * inchi key: ** InChIKey=SEPQTYODOKLVSB-UHFFFAOYSA-N...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRENAL PRENAL] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CC(=CC=O)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SEPQTYODOKLVSB-UHFFFAOYSA-N
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* common name:
 
* common name:
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** 3-methyl-2-butenal
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** ORF
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* molecular weight:
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** threonine--trna_ligase
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** 84.118   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.3 EC-6.1.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** 3-methylbut-2-enal
 
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** 3,3-dimethyl-acrylaldehyde
 
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** prenal
 
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** 3-methylcrotonaldehyde
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[1.8.3.5-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-11989]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 ATP[c] '''+''' 1 L-threonine[c] '''+''' 1 a tRNAthr[c] '''=>''' 1 an L-threonyl-[tRNAthr][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
 +
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_13142]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4406]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=61020 61020]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24624 24624]
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* HMDB : HMDB12157
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* LIGAND-RXN:
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* LIGAND-CPD:
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** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
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** [http://www.genome.jp/dbget-bin/www_bget?C07330 C07330]
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* UNIPROT:
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/O83809 O83809]
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** [http://www.chemspider.com/Chemical-Structure.10820046.html 10820046]
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** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P56071 P56071]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15825 15825]
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** [http://www.uniprot.org/uniprot/O58430 O58430]
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* METABOLIGHTS : MTBLC15825
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** [http://www.uniprot.org/uniprot/P47615 P47615]
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{{#set: smiles=CC(=CC=O)C}}
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** [http://www.uniprot.org/uniprot/O05947 O05947]
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{{#set: inchi key=InChIKey=SEPQTYODOKLVSB-UHFFFAOYSA-N}}
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** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
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{{#set: common name=3-methyl-2-butenal}}
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** [http://www.uniprot.org/uniprot/O67583 O67583]
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{{#set: molecular weight=84.118    }}
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** [http://www.uniprot.org/uniprot/O27504 O27504]
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{{#set: common name=3-methylbut-2-enal|3,3-dimethyl-acrylaldehyde|prenal|3-methylcrotonaldehyde}}
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** [http://www.uniprot.org/uniprot/O51662 O51662]
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{{#set: produced by=1.8.3.5-RXN|RXN-11989}}
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** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
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** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
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** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
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** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
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** [http://www.uniprot.org/uniprot/P43014 P43014]
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** [http://www.uniprot.org/uniprot/P46244 P46244]
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** [http://www.uniprot.org/uniprot/P75225 P75225]
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** [http://www.uniprot.org/uniprot/Q48989 Q48989]
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** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
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** [http://www.uniprot.org/uniprot/O04630 O04630]
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** [http://www.uniprot.org/uniprot/P18255 P18255]
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** [http://www.uniprot.org/uniprot/P18256 P18256]
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** [http://www.uniprot.org/uniprot/P04801 P04801]
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** [http://www.uniprot.org/uniprot/P07236 P07236]
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** [http://www.uniprot.org/uniprot/P26639 P26639]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=threonine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.3}}
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{{#set: gene associated=Tiso_gene_13142|Tiso_gene_4406}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:56, 21 March 2018

Reaction THREONINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • threonine--trna_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-threonine[c] + 1 a tRNAthr[c] => 1 an L-threonyl-[tRNAthr][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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