Difference between revisions of "MCDH 2mb2coa"

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(Created page with "Category:Gene == Gene Tiso_gene_14984 == * right end position: ** 5089 * transcription direction: ** NEGATIVE * left end position: ** 3186 * centisome position: ** 60.0678...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11357 RXN-11357] ==
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== Gene Tiso_gene_14984 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5089
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* common name:
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* transcription direction:
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** 9,9′-dicis-ζ-carotene desaturase
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** NEGATIVE
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* left end position:
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** 3186
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* centisome position:
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** 60.067875   
 
* Synonym(s):
 
* Synonym(s):
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** ζ-carotene desaturase
 
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** ZDS
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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** 1 [[ETR-Quinones]][c] '''+''' 1 [[CPD-7524]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[CPD-7496]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 an electron-transfer quinone[c] '''+''' 1 7,9,9'-cis-neurosporene[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 prolycopene[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-synechocystis]]
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* [[Tiso_gene_7142]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* Reaction: [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** Source: [[annotation-in-silico_annotation]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* [[ILEUSYN-PWY]]
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* [[ILEUDEG-PWY]]
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* [[LEU-DEG2-PWY]]
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* [[VALDEG-PWY]]
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* [[PWY-5057]]
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* [[VALSYN-PWY]]
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* [[PWY-7767]]
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* [[PWY-5108]]
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* [[PWY-5076]]
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* [[PWY-5103]]
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* [[PWY-5101]]
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* [[PWY-5078]]
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* [[ALANINE-VALINESYN-PWY]]
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* [[LEUSYN-PWY]]
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* [[PWY-5104]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5089}}
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{{#set: common name=9,9′-dicis-ζ-carotene desaturase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=ζ-carotene desaturase|ZDS}}
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{{#set: left end position=3186}}
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{{#set: gene associated=Tiso_gene_7142}}
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{{#set: centisome position=60.067875    }}
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{{#set: in pathway=PWY-6475}}
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{{#set: reaction associated=BRANCHED-CHAINAMINOTRANSFERILEU-RXN|BRANCHED-CHAINAMINOTRANSFERLEU-RXN|BRANCHED-CHAINAMINOTRANSFERVAL-RXN}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=ILEUSYN-PWY|ILEUDEG-PWY|LEU-DEG2-PWY|VALDEG-PWY|PWY-5057|VALSYN-PWY|PWY-7767|PWY-5108|PWY-5076|PWY-5103|PWY-5101|PWY-5078|ALANINE-VALINESYN-PWY|LEUSYN-PWY|PWY-5104}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 16:05, 21 March 2018

Gene Tiso_gene_14984

  • right end position:
    • 5089
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3186
  • centisome position:
    • 60.067875
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=MCDH_2mb2coa&oldid=38721"